Motif J3_46299.1 Version J3_46299.1 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 1-19 | 3-18 | 4-7 | 6-12 | 8-11 | 9-10 | 11-17 | 13-16 | 14-15 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4WF9_015 | 4WF9 | 0.0836 | 1 | X | LSU rRNA | A | 359 | A | 360 | U | 361 | C | 362 | A | 363 | A | 365 | G | 366 | A | 367 | A | 368 | * | U | 380 | G | 381 | U | 382 | A | 383 | G | 384 | * | C | 340 | G | 341 | A | 342 | A | 343 | U | 344 | cWW | ncsS | cWW | cSW | tHS | cWW | cHH | cWW | |
| 2 | J3_8VTW_041 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | C | 316 | G | 317 | C | 318 | C | 319 | A | 320 | A | 322 | G | 323 | A | 324 | G | 325 | * | C | 337 | G | 338 | U | 339 | A | 340 | G | 341 | * | C | 297 | G | 298 | A | 299 | A | 300 | G | 301 | cWW | cSW | tHS | cWW | cHH | tHS | cWW | ||
| 3 | J3_5J7L_068 | 5J7L | 0.0740 | 1 | DA | LSU rRNA | C | 316 | G | 317 | C | 318 | G | 319 | A | 320 | A | 322 | C | 323 | A | 324 | G | 325 | * | C | 337 | G | 338 | U | 339 | A | 340 | C | 341 | * | G | 297 | G | 298 | A | 299 | A | 300 | G | 301 | cWW | cWW | cSW | tHS | cWW | cHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAU*AAUCAAAGAA*UGUAG | 1 |
| CGAAG*CGCCAGAGAG*CGUAG | 1 |
| GGAAG*CGCGAUACAG*CGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*AUCAAAGA*GUA | 1 |
| GAA*GCCAGAGA*GUA | 1 |
| GAA*GCGAUACA*GUA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.06 | Max 0.10
Coloring options: