J3_8VTW_041

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8VTW|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VTW|1|1A|C|297
8VTW|1|1A|G|298
8VTW|1|1A|A|299
8VTW|1|1A|A|300
8VTW|1|1A|G|301
*
8VTW|1|1A|C|316
8VTW|1|1A|G|317
8VTW|1|1A|C|318
8VTW|1|1A|C|319
8VTW|1|1A|A|320
8VTW|1|1A|G|321
8VTW|1|1A|A|322
8VTW|1|1A|G|323
8VTW|1|1A|A|324
8VTW|1|1A|G|325
*
8VTW|1|1A|C|337
8VTW|1|1A|G|338
8VTW|1|1A|U|339
8VTW|1|1A|A|340
8VTW|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24