Motif J3_53372.1 Version J3_53372.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-10 | 5-6 | 7-8 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8SYK_001 | 8SYK | 0.0000 | 1 | A | RNA device 43 truncation mutant 3 (U100C) | G | 50 | A | 51 | G | 52 | A | 53 | G | 54 | * | C | 72 | U | 73 | * | A | 90 | A | 92 | A | 93 | C | 94 | A | 95 | U | 96 | A | 97 | C | 98 | cWW | cwW | ncWB | tWH | cWW | ncWW |
| 2 | J3_3EGZ_001 | 3EGZ | 0.3326 | 1 | B | Tetracycline aptamer and artificial riboswitch | G | 5 | A | 6 | G | 7 | A | 8 | G | 9 | * | C | 27 | U | 28 | * | A | 53 | A | 55 | A | 56 | C | 57 | A | 58 | U | 59 | A | 60 | C | 61 | cWW | cwW | cWB | tWH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAG*CU*AAAACAUAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGA**AAACAUA | 2 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-F-F-tWH-F-cWW-F-cWW-F
- Heat map statistics
- Min 0.33 | Avg 0.17 | Max 0.33
Coloring options: