Motif J3_53783.2 Version J3_53783.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 1-21 | 2-20 | 3-9 | 4-11 | 4-12 | 5-8 | 6-7 | 9-10 | 10-13 | 11-12 | 15-16 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8OI5_015 | 8OI5 | 0.6397 | 2 | 1 | LSU rRNA | A | 1533 | G | 1534 | A | 1535 | U | 1536 | G | 1537 | G | 1538 | * | C | 1547 | G | 1548 | U | 1549 | U | 1550 | U | 1551 | A | 1553 | A | 1554 | C | 1555 | G | 1556 | * | C | 1574 | A | 1575 | C | 1577 | C | 1578 | A | 1579 | U | 1580 | cWW | ntSH | tHW | ntWW | tHS | cWW | ncSH | cWW | |||
| 2 | J3_8GLP_031 | 8GLP | 0.0000 | 5 | L5 | LSU rRNA | A | 2451 | G | 2452 | A | 2453 | U | 2454 | G | 2455 | G | 2456 | * | C | 2465 | G | 2466 | U | 2467 | U | 2468 | C | 2469 | G | 2471 | A | 2473 | G | 2474 | G | 2476 | * | C | 2501 | G | 2502 | C | 2505 | G | 2506 | A | 2507 | PSU | 2508 | cWW | tSH | tHW | tHS | cWW | ncSH | tWW | cWW | cWW | ||
| 3 | J3_9PN5_015 | 9PN5 | 0.6105 | 3 | A1 | LSU rRNA | A | 1537 | G | 1538 | A | 1539 | U | 1540 | G | 1541 | G | 1542 | * | C | 1551 | G | 1552 | U | 1553 | U | 1554 | U | 1555 | A | 1557 | A | 1559 | G | 1560 | G | 1561 | * | C | 1578 | A | 1580 | C | 1581 | C | 1582 | A | 1583 | U | 1584 | cWW | tSH | tHW | tWW | ntSH | tHS | cWW | ncSH | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAUGG*CGUUUCAACG*CAACCAU | 1 |
| AGAUGG*CGUUCCGAAGGG*CGGCCGAPSU | 1 |
| AGAUGG*CGUUUCAAAGG*CCACCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUG*GUUUCAAC*AACCA | 1 |
| GAUG*GUUCCGAAGG*GGCCGA | 1 |
| GAUG*GUUUCAAAG*CACCA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F
- Heat map statistics
- Min 0.61 | Avg 0.42 | Max 0.65
Coloring options: