Motif J3_59314.1 Version J3_59314.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 3-6 | 4-5 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8UO6_001 | 8UO6 | 0.0000 | 2 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | U | 37 | G | 39 | G | 40 | C | 41 | * | G | 63 | G | 64 | A | 66 | C | 67 | A | 68 | G | 69 | G | 70 | * | U | 90 | A | 91 | cWW | cWH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGGC*GGUACAGG*UA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGG*GUACAG* | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-F-cWW-cWH-cWW-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: