Motif J3_60223.1 Version J3_60223.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 4-8 | 4-9 | 6-7 | 8-11 | 9-10 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5J7L_049 | 5J7L | 0.0000 | 2 | DB | 5S rRNA | G | 10 | C | 11 | C | 12 | G | 13 | A | 15 | G | 16 | * | C | 68 | G | 69 | C | 70 | * | G | 106 | G | 107 | A | 109 | C | 110 | cWW | ntsS | ncSW | ntSS | cWW | tHS | cWW | |
2 | J3_5KTJ_001 | 5KTJ | 0.7664 | 0 | A+B | Pistol (50-MER) + RNA (15-mer) | G | 28 | U | 29 | U | 30 | A | 31 | G | 32 | G | 33 | * | C | 41 | G | 42 | G | 43 | * | C | 9 | G | 10 | U | 11 | C | 12 | cWW | cwW | ncsS | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCCGUAG*CGC*GGAAC | 1 |
GUUAGG*CGG*CGUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CCGUA*G*GAA | 1 |
UUAG*G*GU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Heat map statistics
- Min 0.77 | Avg 0.38 | Max 0.77
Coloring options: