Motif J3_67856.1 Version J3_67856.1 of this group appears in releases 3.88 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10	break		11		12	1-12	6-7	6-9	7-8	10-11
1	J3_6CZR_015	6CZR	0.1405	1a	SSU rRNA	G	357	G	358	A	359	A	360	U	361	C	362	U	363	*	A	389	G	390	C	391	*	G	47	C	48	ncWW	ncSH	cSW	cWW	cWW
2	J3_4LFB_010	4LFB	0.1084	A	SSU rRNA	G	361	G	362	A	363	A	364	U	365	C	366	U	367	*	A	393	G	394	C	395	*	G	46	C	47	cWW		cSW	cWW	cWW
3	J3_5J7L_001	5J7L	0.0000	AA	SSU rRNA	G	361	G	362	A	363	A	364	U	365	A	366	U	367	*	A	393	G	394	C	395	*	G	46	C	47	cWW		cSW	cWW	cWW
4	J3_8C3A_082	8C3A	0.2035	CM	SSU rRNA	C	431	G	432	C	433	A	434	A	435	A	436	U	437	*	A	462	G	463	U	464	*	A	41	G	42	cWW		cSW	cWW	cWW
5	J3_4V88_078	4V88	0.2146	A6	SSU rRNA	C	433	G	434	C	435	A	436	A	437	A	438	U	439	*	A	464	G	465	U	466	*	A	41	G	42	cWW		cSW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCGGAAUCUAGC	2
AGCGCAAAUAGU	2
GCGGAAUAUAGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAUCG	2
GCAAAG	2
GAAUAG	1

Release history

Release	3.88	3.89	3.90
Date	2024-09-11	2024-10-09	2024-11-06
Status	New id, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-cWW-F-F-cSW-F-cWW
Heat map statistics: Min 0.09 | Avg 0.15 | Max 0.27

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