Motif J3_67856.2 Version J3_67856.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 6-7 | 6-9 | 7-8 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_068 | 8P9A | 0.2192 | 0 | sR | SSU rRNA | C | 433 | G | 434 | C | 435 | A | 436 | A | 437 | A | 438 | U | 439 | * | A | 464 | G | 465 | U | 466 | * | A | 41 | G | 42 | cWW | cSW | cWW | cWW | |
| 2 | J3_8C3A_082 | 8C3A | 0.2035 | 0 | CM | SSU rRNA | C | 431 | G | 432 | C | 433 | A | 434 | A | 435 | A | 436 | U | 437 | * | A | 462 | G | 463 | U | 464 | * | A | 41 | G | 42 | cWW | cSW | cWW | cWW | |
| 3 | J3_5J7L_001 | 5J7L | 0.0000 | 0 | AA | SSU rRNA | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | A | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | * | G | 46 | C | 47 | cWW | cSW | cWW | cWW | |
| 4 | J3_4LFB_010 | 4LFB | 0.1084 | 0 | A | SSU rRNA | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | C | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | * | G | 46 | C | 47 | cWW | cSW | cWW | cWW | |
| 5 | J3_6CZR_015 | 6CZR | 0.1405 | 0 | 1a | SSU rRNA | G | 357 | G | 358 | A | 359 | A | 360 | U | 361 | C | 362 | U | 363 | * | A | 389 | G | 390 | C | 391 | * | G | 47 | C | 48 | ncWW | ncSH | cSW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*CGCAAAU*AGU | 2 |
| GC*GGAAUCU*AGC | 2 |
| GC*GGAAUAU*AGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GCAAA*G | 2 |
| *GAAUC*G | 2 |
| *GAAUA*G | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.15 | Max 0.27
Coloring options: