Motif J3_75923.1 Version J3_75923.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-4 | 1-13 | 2-3 | 2-11 | 5-6 | 6-7 | 8-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_2Z75_001 | 2Z75 | 0.0000 | 1 | A+B | glmS ribozyme substrate RNA + glmS ribozyme | G | 7 | G | 8 | * | U | 33 | G | 34 | A | 35 | C | 36 | * | G | 53 | A | 54 | A | 56 | C | 57 | A | 58 | U | 59 | C | 60 | tHS | cWW | cWW | ntsS | cSH | cWW | tWW |
| 2 | J3_3G9C_003 | 3G9C | 0.2779 | 1 | G+R | RNA (11-mer) + glmS ribozyme | G | 7 | A | 8 | * | U | 26 | G | 27 | A | 28 | C | 29 | * | G | 45 | A | 46 | G | 47 | A | 48 | U | 50 | U | 51 | C | 52 | tHS | cWW | cWW | tSW | cSH | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UGAC*GAGACAUC | 1 |
| GA*UGAC*GAGAUUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GA*AGACAU | 1 |
| *GA*AGAUUU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tHS-cWW-tWW-F-F-cSH-F-cWW
- Heat map statistics
- Min 0.28 | Avg 0.14 | Max 0.28
Coloring options: