Motif J3_80708.1 Version J3_80708.1 of this group appears in releases 3.88 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 1-12 | 3-6 | 4-5 | 8-12 | 10-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_3E5C_001 | 3E5C | 0.0000 | 0 | A | SMK box (SAM-III) Riboswitch | C | 6 | G | 7 | A | 8 | A | 9 | * | U | 35 | G | 36 | U | 37 | A | 38 | A | 39 | C | 40 | * | G | 47 | G | 48 | cWW | ntHS | cWW | tWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAA*UGUAAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GUAA* | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-tWS-cWW-F-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: