Motif J3_82365.3 Version J3_82365.3 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 9 | 1-9 | 4-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_008 | 4LFB | 0.8441 | 2 | A | SSU rRNA | G | 1155 | G | 1156 | A | 1157 | C | 1158 | * | G | 1181 | G | 1184 | * | C | 1116 | G | 1117 | C | 1118 | cWW | cWW | cWW |
| 2 | J3_5J7L_010 | 5J7L | 0.8114 | 2 | AA | SSU rRNA | A | 1155 | G | 1156 | A | 1157 | C | 1158 | * | G | 1181 | G | 1184 | * | U | 1116 | A | 1117 | U | 1118 | cWW | cWW | cWW |
| 3 | J3_8P9A_082 | 8P9A | 0.0000 | 2 | sR | SSU rRNA | G | 1386 | G | 1387 | A | 1388 | C | 1389 | * | G | 1412 | U | 1415 | * | A | 1336 | A | 1337 | C | 1338 | cWW | cWW | cWW |
| 4 | J3_8C3A_043 | 8C3A | 0.1738 | 2 | CM | SSU rRNA | G | 1372 | G | 1373 | A | 1374 | C | 1375 | * | G | 1398 | U | 1401 | * | A | 1321 | A | 1322 | C | 1323 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAC*GGAC*GUUU | 2 |
| CGC*GGAC*GGAG | 1 |
| UAU*AGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GA*UU | 2 |
| G*GA*GA | 1 |
| A*GA*GU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.16 | Avg 0.48 | Max 0.95
Coloring options: