Motif J3_84394.1 Version J3_84394.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-5 | 6-9 | 6-11 | 7-8 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8B0X_008 | 8B0X | 0.0000 | 1 | A | SSU rRNA | C | 990 | U | 991 | U | 992 | G | 993 | * | C | 1045 | A | 1046 | G | 1047 | * | C | 1210 | U | 1211 | U | 1212 | A | 1213 | G | 1215 | cWW | tWH | cWW | ntWW | cWW | |
| 2 | J3_4LFB_005 | 4LFB | 0.1702 | 1 | A | SSU rRNA | C | 990 | U | 991 | U | 992 | G | 993 | * | C | 1045 | A | 1046 | G | 1047 | * | C | 1210 | U | 1211 | U | 1212 | A | 1213 | G | 1215 | cWW | tWH | cWW | ntHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG*CAG*CUUACG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*A*UUAC | 2 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Heat map statistics
- Min 0.17 | Avg 0.09 | Max 0.17
Coloring options: