Motif J3_84625.1 Version J3_84625.1 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-2 | 1-13 | 5-8 | 6-7 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_037 | 5J7L | 0.0000 | 1 | DA | LSU rRNA | G | 70 | A | 71 | U | 72 | A | 73 | G | 75 | C | 76 | * | G | 110 | A | 111 | U | 112 | U | 113 | U | 114 | * | A | 56 | C | 57 | ncSs | cWW | cWW | cWW | cWW |
| 2 | J3_7A0S_002 | 7A0S | 0.1720 | 1 | X | LSU rRNA | G | 69 | A | 70 | A | 71 | A | 72 | G | 74 | C | 75 | * | G | 108 | A | 109 | U | 110 | G | 111 | U | 112 | * | A | 55 | C | 56 | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AC*GAUAAGC*GAUUU | 1 |
| AC*GAAAAGC*GAUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AUAAG*AUU | 1 |
| *AAAAG*AUG | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.17 | Avg 0.09 | Max 0.17
Coloring options: