Motif J3_89880.1 Version J3_89880.1 of this group appears in releases 4.4 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 1-8 | 1-17 | 2-12 | 3-7 | 5-6 | 8-11 | 10-17 | 13-14 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9V4U_002 | 9V4U | 0.1096 | 1 | A | Purine riboswitch | A | 8 | U | 9 | A | 10 | A | 11 | G | 12 | * | C | 32 | G | 33 | U | 34 | U | 36 | C | 37 | U | 38 | A | 39 | C | 40 | * | G | 62 | G | 63 | C | 64 | U | 65 | cWW | cWW | tWS | cWW | cWS | cWW | ||
| 2 | J3_9LKE_002 | 9LKE | 0.0000 | 1 | A | Purine riboswitch | A | 8 | U | 9 | A | 10 | A | 11 | G | 12 | * | C | 32 | G | 33 | U | 34 | U | 36 | C | 37 | U | 38 | A | 39 | C | 40 | * | G | 62 | G | 63 | C | 64 | U | 65 | ncSs | cWW | cWW | tWS | cWW | ntWH | cWS | cWW |
| 3 | J3_9LKF_002 | 9LKF | 0.4535 | 1 | A | Purine riboswitch | A | 8 | U | 9 | A | 10 | A | 11 | G | 12 | * | C | 32 | G | 33 | U | 34 | U | 36 | C | 37 | U | 38 | A | 39 | C | 40 | * | G | 62 | G | 63 | C | 64 | U | 65 | cWW | cWW | tWS | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAAG*CGUAUCUAC*GGCU | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GUAUCUA*GC | 3 |
Release history
| Release | 4.4 |
|---|---|
| Date | 2025-12-03 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.23 | Max 0.46
Coloring options: