Motif J3_92750.1 Version J3_92750.1 of this group appears in releases 3.88 to 3.89

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10	break		11		12		13		14	break		15		16		17	1-17	2-16	8-13	9-12	10-11	14-15
1	J3_3MOJ_002	3MOJ	0.0000	0	A	LSU rRNA	A	2560	U	2561	U	2562	U	2563	A	2564	A	2565	A	2566	G	2567	U	2568	G	2569	*	C	2515	A	2516	C	2517	A	2518	*	U	2546	A	2547	U	2548	cWW	ncWW	ncWW	ncWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CACAUAUAUUUAAAGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACAUUUAAAGU	1

Release history

Release	3.88	3.89
Date	2024-09-11	2024-10-09
Status	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (1)
Basepair signature: cWW-F-F-F-cWW-F-F-F-F-F-F-cWW-F-F
Heat map statistics: Min 0.00 | Avg 0.00 | Max 0.00

Help

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The Resolver thinks MMCif

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view

reading 833 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

833 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.4.4_2016.04.25 2016-04-26 17:41 DSSP analysis for model 1.2 - view

Time for creating model: 44 ms

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2 models

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Coloring options: Nucleotide numbers

Motif J3_92750.1 Version J3_92750.1 of this group appears in releases 3.88 to 3.89 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif J3_92750.1 Version J3_92750.1 of this group appears in releases 3.88 to 3.89

Download

Csv

Json