Motif J3_98114.4 Version J3_98114.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | 26 | 27 | 1-27 | 2-19 | 3-18 | 3-20 | 4-17 | 6-13 | 7-13 | 8-14 | 9-10 | 21-24 | 21-25 | 22-23 | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9PN5_002 | 9PN5 | 0.0801 | 5 | A1 | LSU rRNA | C | 113 | A | 114 | A | 115 | A | 116 | U | 118 | U | 119 | A | 122 | A | 123 | U | 124 | * | A | 144 | G | 145 | U | 146 | G | 148 | U | 149 | A | 150 | A | 151 | U | 152 | U | 153 | U | 154 | G | 155 | A | 157 | G | 158 | * | C | 263 | G | 264 | A | 265 | A | 266 | G | 267 | cWW | tHW | ntWW | ntHH | ncBW | tHS | cWW | cWW | tHS | cWW | ||
| 2 | J3_8OI5_002 | 8OI5 | 0.0000 | 5 | 1 | LSU rRNA | C | 112 | A | 113 | A | 114 | A | 115 | U | 117 | U | 118 | A | 121 | A | 122 | U | 123 | * | A | 143 | G | 144 | U | 145 | G | 147 | U | 148 | A | 149 | A | 150 | U | 151 | U | 152 | U | 153 | G | 154 | A | 156 | G | 157 | * | C | 263 | G | 264 | A | 265 | C | 266 | G | 267 | cWW | tHW | ncBW | ntHS | cWW | cWW | tHS | cWW | ||||
| 3 | J3_9AXU_002 | 9AXU | 0.0963 | 5 | 2 | LSU rRNA | C | 113 | A | 114 | A | 115 | A | 116 | U | 118 | U | 119 | A | 122 | A | 123 | U | 124 | * | A | 150 | G | 151 | U | 152 | G | 154 | U | 155 | A | 156 | A | 157 | U | 158 | U | 159 | U | 160 | C | 161 | A | 163 | G | 164 | * | C | 271 | G | 272 | A | 273 | A | 274 | G | 275 | cWW | tHW | ncWB | ntHW | ncBW | tHS | cWW | cWW | tHS | ncWB | cWW | |
| 4 | J3_9SUM_002 | 9SUM | 0.0949 | 5 | A | LSU rRNA | C | 111 | A | 112 | A | 113 | C | 114 | U | 116 | U | 117 | A | 120 | A | 121 | U | 122 | * | A | 133 | G | 134 | U | 135 | G | 137 | U | 138 | A | 139 | G | 140 | U | 141 | C | 142 | U | 143 | G | 144 | A | 146 | G | 147 | * | C | 253 | G | 254 | A | 255 | C | 256 | G | 257 | cWW | tHW | ntHS | ncBW | tHS | cWW | cWW | tHS | cWW | |||
| 5 | J3_9H3G_006 | 9H3G | 0.3560 | 5 | A | LSU rRNA | C | 111 | A | 112 | G | 113 | C | 114 | U | 116 | G | 117 | A | 120 | A | 121 | U | 122 | * | A | 142 | A | 143 | OMU | 144 | G | 146 | U | 147 | A | 148 | G | 149 | PSU | 150 | C | 151 | U | 152 | G | 153 | A | 155 | G | 156 | * | C | 260 | U | 261 | A | 262 | C | 263 | G | 264 | cWW | tHW | ntWW | tHS | cWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG | 1 |
| CAAAUUUGAAAU*AGUUGUAAUUUGAAG*CGACG | 1 |
| CAAAUUUGAAAU*AGUUGUAAUUUCAAG*CGAAG | 1 |
| CAACUUUGGAAU*AGUUGUAGUCUGGAG*CGACG | 1 |
| CAGCUUGAAAAU*AA(OMU)UGUAG(PSU)CUGGAG*CUACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUUUGAAA*GUUGUAAUUUGGA*GAA | 1 |
| AAAUUUGAAA*GUUGUAAUUUGAA*GAC | 1 |
| AAAUUUGAAA*GUUGUAAUUUCAA*GAA | 1 |
| AACUUUGGAA*GUUGUAGUCUGGA*GAC | 1 |
| AGCUUGAAAA*A(OMU)UGUAG(PSU)CUGGA*UAC | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-tHS-cWW-F-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.16 | Max 0.36
Coloring options: