Motif J4_24280.2 Version J4_24280.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V9F_006 | 4V9F | 0.4607 | 0 | 0 | LSU rRNA | C | 1551 | G | 1552 | * | U | 1569 | C | 1570 | * | G | 1627 | G | 1628 | * | C | 1633 | G | 1634 | cWW | cWW | cWW | cWW |
| 2 | J4_8CRE_005 | 8CRE | 0.0907 | 0 | 1 | LSU rRNA | G | 1670 | G | 1671 | * | C | 1689 | U | 1690 | * | A | 1748 | G | 1749 | * | U | 1768 | C | 1769 | cWW | cWW | cWW | cWW |
| 3 | J4_8P9A_016 | 8P9A | 0.0000 | 0 | AR | LSU rRNA | G | 1674 | G | 1675 | * | C | 1693 | U | 1694 | * | A | 1752 | G | 1753 | * | U | 1772 | C | 1773 | cWW | cWW | cWW | cWW |
| 4 | J4_5J7L_024 | 5J7L | 0.1641 | 0 | DA | LSU rRNA | A | 1525 | C | 1526 | * | G | 1546 | C | 1547 | * | G | 1444 | G | 1445 | * | U | 1466 | U | 1467 | cWW | cWW | cWW | cWW |
| 5 | J4_9DFE_006 | 9DFE | 0.3936 | 1 | 1A | LSU rRNA | G | 1525 | G | 1526 | * | C | 1546 | C | 1547 | * | G | 1444 | C | 1445|||A | * | G | 1466 | C | 1467 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*CU*AG*UC | 2 |
| CG*UC*GG*CG | 1 |
| GG*UU*AC*GC | 1 |
| GAC*GC*GG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 4 |
| A*** | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.30 | Max 0.51
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