Motif J4_41729.1 Version J4_41729.1 of this group appears in releases 3.85 to 3.85
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9BUN_001 | 9BUN | 0.2662 | 0 | A | RNA (48-MER) | U | 5 | C | 6 | * | G | 13 | U | 14 | * | A | 20 | G | 21 | * | C | 42 | A | 43 | cWW | cWW | cWW | cWW |
| 2 | J4_8JY0_001 | 8JY0 | 0.0000 | 0 | B | RhoBAST | U | 7 | C | 8 | * | G | 29 | U | 30 | * | A | 36 | G | 37 | * | C | 58 | A | 59 | cWW | cWW | cWW | cWW |
| 3 | J4_5Y85_002 | 5Y85 | 0.6231 | 0 | D+C | DNA/RNA (50-MER) | G | 37 | G | 38 | * | C | 12 | G | 13 | * | C | 6 | G | 7 | * | C | 23 | C | 24 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GU*AG*CA | 2 |
| CG*CG*CC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 3 |
Release history
| Release | 3.85 |
|---|---|
| Date | 2024-06-19 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.35 | Max 0.69
Coloring options: