Motif J4_48907.2 Version J4_48907.2 of this group appears in releases 3.70 to 3.73
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8DP3_001 | 8DP3 | 0.3901 | 0 | R | Enterovirus 5' cloverleaf cis-acting replication element | G | 10 | C | 11 | * | G | 35 | G | 36 | * | C | 46 | G | 47 | * | C | 80 | C | 81 | cWW | cWW | cWW | cWW | |
| 2 | J4_1U9S_001 | 1U9S | 0.0000 | 0 | RNase P junction | A | RNase P class A | G | 79 | C | 80 | * | G | 94 | G | 95 | * | C | 109 | G | 110 | * | C | 230 | C | 231 | cWW | cWW | cWW | cWW |
| 3 | J4_1NBS_002 | 1NBS | 0.3674 | 0 | RNase P junction | B | RNase P class B | G | 90 | C | 91 | * | G | 112 | G | 113 | * | C | 131 | G | 132 | * | C | 234 | C | 235 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GG*CG*CC | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 3 |
- Annotations
-
- RNase P junction (2)
- (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.37 | Avg 0.27 | Max 0.47
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