#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4break 5 6break 7 81-82-34-56-7
1 J4_8DP3_0018DP30.39010REnterovirus 5' cloverleaf cis-acting replication elementG10C11*G35G36*C46G47*C80C81cWWcWWcWWcWW
2 J4_1U9S_0011U9S0.00000RNase PARIBONUCLEASE PG79C80*G94G95*C109G110*C230C231cWWcWWcWWcWW
3 J4_1NBS_0021NBS0.36740RNase PB RNase P class BG90C91*G112G113*C131G132*C234C235cWWcWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GC*GG*CG*CC3
Non-Watson-Crick part of the motif
SequenceCounts
***3

Release history

Release3.703.713.723.73
Date2023-04-262023-05-242023-06-212023-07-19
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • RNase P (2)
  • (1)
  • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.37 | Avg 0.27 | Max 0.47
    Help

    Coloring options:

    J4_8DP3_001:J4_8DP3_001 = 0J4_8DP3_001:J4_1U9S_001 = 0.3901J4_8DP3_001:J4_1NBS_002 = 0.4738J4_1U9S_001:J4_8DP3_001 = 0.3901J4_1U9S_001:J4_1U9S_001 = 0J4_1U9S_001:J4_1NBS_002 = 0.3674J4_1NBS_002:J4_8DP3_001 = 0.4738J4_1NBS_002:J4_1U9S_001 = 0.3674J4_1NBS_002:J4_1NBS_002 = 0J4_8DP3_001J4_1U9S_001J4_1NBS_002Discrepancy0.000.100.200.300.40
    Copyright 2025 BGSU RNA group. Page generated in 0.314 s
    Application loaded.