Motif J4_76096.3 Version J4_76096.3 of this group appears in releases 3.90 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9BUN_001 | 9BUN | 0.4081 | 0 | A | RNA (48-MER) | A | 20 | G | 21 | * | C | 42 | A | 43 | * | U | 5 | C | 6 | * | G | 13 | U | 14 | cWW | cWW | cWW | cWW |
| 2 | J4_9DXL_001 | 9DXL | 0.4395 | 0 | A | RhoBAST aptamer | A | 20 | G | 21 | * | C | 42 | A | 43 | * | U | 5 | C | 6 | * | G | 13 | U | 14 | cWW | cWW | cWW | cWW |
| 3 | J4_8JY0_001 | 8JY0 | 0.3666 | 0 | B | RhoBAST | A | 36 | G | 37 | * | C | 58 | A | 59 | * | U | 7 | C | 8 | * | G | 29 | U | 30 | cWW | cWW | cWW | cWW |
| 4 | J4_8V1H_001 | 8V1H | 0.0000 | 0 | A | pre-mascRNA | G | 7 | G | 8 | * | C | 18 | U | 19 | * | A | 33 | C | 34 | * | G | 50 | C | 51 | cWW | cWW | cWW | cWW |
| 5 | J4_8V1I_002 | 8V1I | 0.2305 | 0 | B | mascRNA | G | 7 | G | 8 | * | C | 18 | U | 19 | * | A | 33 | C | 34 | * | G | 50 | C | 51 | cWW | cWW | cWW | cWW |
| 6 | J4_8VT5_001 | 8VT5 | 0.2612 | 0 | A | menRNA | G | 8 | G | 9 | * | C | 18 | G | 19 | * | C | 35 | C | 36 | * | G | 52 | C | 53 | cWW | cWW | cWW | cWW |
| 7 | J4_5Y85_002 | 5Y85 | 0.3856 | 0 | D+C | DNA/RNA (50-MER) | C | 6 | G | 7 | * | C | 23 | C | 24 | * | G | 37 | G | 38 | * | C | 12 | G | 13 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GU*AG*CA | 3 |
| GG*CU*AC*GC | 2 |
| GG*CG*CC*GC | 1 |
| CG*CG*CC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 7 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.23 | Avg 0.40 | Max 0.78
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