Motif J4_78628.2 Version J4_78628.2 of this group appears in releases 3.54 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | break | 5 | 6 | break | 7 | 8 | 1-8 | 2-3 | 4-5 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4V9F_006 | 4V9F | 0.4982 | 0 | 0 | LSU rRNA | G | 1627 | G | 1628 | * | C | 1633 | G | 1634 | * | C | 1551 | G | 1552 | * | U | 1569 | C | 1570 | cWW | cWW | cWW | cWW |
| 2 | J4_5TBW_005 | 5TBW | 0.1705 | 0 | 1 | LSU rRNA | A | 1752 | G | 1753 | * | U | 1772 | C | 1773 | * | G | 1674 | G | 1675 | * | C | 1693 | U | 1694 | cWW | cWW | cWW | cWW |
| 3 | J4_5J7L_024 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 1444 | G | 1445 | * | U | 1466 | U | 1467 | * | A | 1525 | C | 1526 | * | G | 1546 | C | 1547 | cWW | cWW | cWW | cWW |
| 4 | J4_7RQB_006 | 7RQB | 0.3567 | 1 | 1A | LSU rRNA | G | 1444 | C | 1445|||A | * | G | 1466 | C | 1467 | * | G | 1525 | G | 1526 | * | C | 1546 | C | 1547 | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UC*GG*CG | 1 |
| GG*CU*AG*UC | 1 |
| GG*UU*AC*GC | 1 |
| GAC*GC*GG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *** | 3 |
| A*** | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-09-14 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.33 | Max 0.64
Coloring options: