Motif J4_78628.3 Version J4_78628.3 of this group appears in releases 3.87 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4	break		5		6	break		7		8	1-8	2-3	4-5	6-7
1	J4_4V9F_006	4V9F	0.4982	0	0	LSU rRNA	G	1627	G	1628	*	C	1633	G	1634	*	C	1551	G	1552	*	U	1569	C	1570	cWW	cWW	cWW	cWW
2	J4_5TBW_005	5TBW	0.1705	0	1	LSU rRNA	A	1752	G	1753	*	U	1772	C	1773	*	G	1674	G	1675	*	C	1693	U	1694	cWW	cWW	cWW	cWW
3	J4_5J7L_024	5J7L	0.0000	0	DA	LSU rRNA	G	1444	G	1445	*	U	1466	U	1467	*	A	1525	C	1526	*	G	1546	C	1547	cWW	cWW	cWW	cWW
4	J4_8VTW_006	8VTW	0.3461	1	1A	LSU rRNA	G	1444	C	1445\|\|\|A	*	G	1466	C	1467	*	G	1525	G	1526	*	C	1546	C	1547	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUCGG*CG	1
GGCUAG*UC	1
GGUUAC*GC	1
GACGCGG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
***	3
A***	1

Release history

Release	3.87	3.88	3.89	3.90
Date	2024-08-14	2024-09-11	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-cWW-cWW-cWW
Heat map statistics: Min 0.17 | Avg 0.33 | Max 0.64

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