Motif J4_95929.1 Version J4_95929.1 of this group appears in releases 3.7 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 2-10 | 3-4 | 5-6 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_6CB3_002 | 6CB3 | 0.0000 | 0 | B | RNA (99-MER) | C | 15 | G | 16 | U | 17 | * | A | 28 | A | 29 | * | U | 69 | G | 70 | * | U | 87 | U | 88 | A | 89 | G | 90 | cWW | cWS | tSH | cWW | cWW | cWW |
| 2 | J4_4Y1J_001 | 4Y1J | 0.1721 | 0 | A | yybP-ykoY riboswitch | C | 15 | G | 16 | U | 17 | * | A | 28 | A | 29 | * | U | 69 | G | 70 | * | U | 87 | U | 88 | A | 89 | G | 90 | cWW | cWS | tSH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AA*UG*UUAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G***UA | 2 |
Release history
| Release | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 |
|---|---|---|---|---|---|---|---|---|
| Date | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWS-tSH-cWW-cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.09 | Max 0.17
Coloring options: