Motif J5_31814.1 Version J5_31814.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | break | 21 | 22 | 23 | 24 | 25 | 26 | 27 | break | 28 | 29 | 30 | 31 | 1-31 | 2-15 | 3-10 | 4-9 | 6-7 | 10-11 | 11-13 | 11-14 | 12-26 | 13-14 | 16-24 | 17-18 | 18-23 | 18-30 | 19-22 | 20-21 | 23-29 | 24-27 | 24-29 | 24-30 | 27-28 | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4Y4O_011 | 4Y4O | 0.0000 | 2 | 2A | LSU rRNA | C | 268 | U | 269 | A | 270 | A | 271 | A | 271|||A | C | 271|||B | * | G | 271|||V | G | 271|||W | G | 271|||X | U | 271|||Y | C | 271|||Z | G | 272 | G | 272|||B | * | C | 366 | G | 370 | A | 371 | G | 372 | U | 373 | A | 374 | C | 375 | * | G | 399 | G | 400 | A | 401 | A | 402 | U | 403 | C | 404 | G | 406 | * | U | 421 | A | 422 | A | 423 | G | 424 | cWW | cWW | tHW | tHS | cWW | cSs | cWW | cWW | tHH | cSH | tWH | ncSs | tHS | cWW | ntWW | ntWW | cWW | ||||
| 2 | J5_4WF9_008 | 4WF9 | 0.2070 | 2 | X | LSU rRNA | C | 271 | C | 272 | A | 273 | A | 274 | A | 275 | C | 276 | * | G | 295 | G | 296 | G | 297 | U | 298 | U | 299 | G | 300 | A | 302 | * | U | 415 | G | 416 | A | 417 | G | 418 | U | 419 | A | 420 | C | 421 | * | G | 445 | G | 446 | A | 447 | A | 448 | U | 449 | C | 450 | G | 452 | * | U | 467 | A | 468 | A | 469 | G | 470 | cWW | cWW | tHW | ntHS | cWW | cSH | tWS | cWW | ncWW | ntHH | cSH | ntWH | cSs | tHS | cWW | ntWW | ncsS | ntWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG | 1 |
| CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAA*GGUCGU*GAGUA*GAAUCU*AA | 1 |
| CAAA*GGUUGU*GAGUA*GAAUCU*AA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-cWW-cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-tHS-F-cWW
- Heat map statistics
- Min 0.21 | Avg 0.10 | Max 0.21
Coloring options: