Motif J5_31814.4 Version J5_31814.4 of this group appears in releases 3.87 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | break | 20 | 21 | 22 | 23 | 24 | 25 | 26 | break | 27 | 28 | 29 | 30 | 1-30 | 2-14 | 3-9 | 4-8 | 5-6 | 9-10 | 10-12 | 10-13 | 11-25 | 12-13 | 15-23 | 16-17 | 17-22 | 17-29 | 18-21 | 19-20 | 22-28 | 23-26 | 23-29 | 26-27 | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4WF9_008 | 4WF9 | 0.1741 | 3 | X | LSU rRNA | C | 271 | C | 272 | A | 273 | A | 274 | C | 276 | * | G | 295 | G | 296 | G | 297 | U | 298 | U | 299 | G | 300 | A | 302 | * | U | 415 | G | 416 | A | 417 | G | 418 | U | 419 | A | 420 | C | 421 | * | G | 445 | G | 446 | A | 447 | A | 448 | U | 449 | C | 450 | G | 452 | * | U | 467 | A | 468 | A | 469 | G | 470 | cWW | cWW | tHW | ntHS | cWW | cSH | tWS | cWW | ncWW | ntHH | cSH | ntWH | cSs | tHS | cWW | ntWW | ncsS | ntWW | ncWW | |
| 2 | J5_7A0S_002 | 7A0S | 0.0000 | 3 | X | LSU rRNA | C | 245 | C | 246 | A | 247 | A | 248 | C | 250 | * | G | 269 | G | 270 | G | 271 | U | 272 | U | 273 | G | 274 | A | 276 | * | U | 382 | G | 383 | A | 384 | G | 385 | U | 386 | A | 387 | G | 388 | * | U | 412 | G | 413 | A | 414 | A | 415 | U | 416 | C | 417 | G | 419 | * | C | 434 | A | 435 | A | 436 | G | 437 | cWW | cWW | tHW | tHS | cWW | ncSH | ntWS | cWW | cWW | ntHH | cSH | tWH | ntHS | cWW | ntWW | ntWW | cWW | |||
| 3 | J5_8VTW_002 | 8VTW | 0.1937 | 3 | 1A | LSU rRNA | C | 268 | U | 269 | A | 270 | A | 271 | C | 271|||B | * | G | 271|||V | G | 271|||W | G | 271|||X | U | 271|||Y | C | 271|||Z | G | 272 | G | 272|||B | * | C | 366 | G | 370 | A | 371 | G | 372 | U | 373 | A | 374 | C | 375 | * | G | 399 | G | 400 | A | 401 | A | 402 | U | 403 | C | 404 | G | 406 | * | U | 421 | A | 422 | A | 423 | G | 424 | cWW | cWW | tHW | tHS | cWW | ncSs | cWW | cWW | tHH | cSH | tWH | ncSs | tHS | cWW | ntWW | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG | 1 |
| CCAAAC*GGGUUGUA*UGAGUAG*UGAAUCCG*CAAG | 1 |
| CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAA*GGUUGU*GAGUA*GAAUCU*AA | 1 |
| CAAA*GGUUGU*GAGUA*GAAUCC*AA | 1 |
| UAAA*GGUCGU*GAGUA*GAAUCU*AA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cSS-tHW-F-tHS-cWW-cWW-cWW-F-F-tHH-cSH-tWH-tWS-tHS-cWW-cWW-cSH
- Heat map statistics
- Min 0.17 | Avg 0.13 | Max 0.21
Coloring options: