Motif J5_98690.1 Version J5_98690.1 of this group appears in releases 3.83 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | break | 18 | 19 | break | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | break | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 1-34 | 2-33 | 7-24 | 9-22 | 14-15 | 17-18 | 19-20 | 27-28 | ||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8UIW_001 | 8UIW | 0.0000 | 1 | N | yjdF RNA (R. gauvreauii) | A | 9 | U | 10 | A | 11 | A | 12 | A | 13 | A | 14 | A | 15 | C | 16 | A | 17 | C | 18 | A | 19 | A | 20 | C | 21 | G | 22 | * | C | 42 | A | 43 | G | 44 | * | C | 64 | A | 65 | * | U | 92 | A | 93 | A | 94 | G | 95 | A | 97 | A | 98 | C | 99 | C | 100 | * | G | 115 | U | 116 | C | 117 | C | 118 | A | 119 | U | 120 | U | 121 | cWW | cwW | cWB | cSW | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAAAAACACAACG*CAG*CA*UAAGUAACC*GUCCAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAAAACACAAC*A**AAGUAAC*UCCAU | 1 |
Release history
| Release | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cSW-F-F-F-F-F-F-F-F-cWW-F-cWW-F-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: