Motif J6_18258.1 Version J6_18258.1 of this group appears in releases 3.95 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | break | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 1-33 | 2-3 | 3-4 | 4-32 | 5-33 | 7-8 | 9-10 | 11-19 | 11-30 | 13-14 | 20-28 | 20-31 | 21-27 | 22-26 | 24-25 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J6_4V9F_002 | 4V9F | 0.0000 | 5 | 0 | LSU rRNA | U | 2115 | U | 2116 | A | 2118 | * | U | 2276 | U | 2277 | U | 2278 | G | 2279 | * | C | 2292 | G | 2293 | * | C | 2315 | G | 2316 | C | 2317 | C | 2318 | * | G | 2421 | U | 2422 | C | 2423 | U | 2424 | G | 2426 | C | 2427 | G | 2428 | A | 2429 | A | 2430 | C | 2431 | C | 2432 | * | G | 2459 | A | 2460 | U | 2461 | G | 2462 | A | 2463 | C | 2464 | G | 2466 | A | 2469 | A | 2470 | cWW | cWH | cWW | tsS | cWH | cWW | cWW | ntSW | cWW | cWW | tHh | tSS | tHW | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CGCC*GUCUAGCGAACCGAUGACAGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU**GC*UCUAGCGAACAUGACAGAAA | 1 |
Release history
| Release | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-tSS-cWW-F-F-tHH-cWW-tHW-F-cWW-cWW-F-F-F-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: