Motif J7_22176.1 Version J7_22176.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | break | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | break | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | break | 25 | 26 | 27 | 28 | 29 | 30 | 1-30 | 2-29 | 3-28 | 4-14 | 6-7 | 8-9 | 11-12 | 15-20 | 17-18 | 22-23 | 24-25 | 27-28 | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J7_8P9A_002 | 8P9A | 0.0000 | 1 | AR | LSU rRNA | C | 949 | G | 950 | A | 951 | A | 952 | G | 953 | U | 954 | * | A | 967 | G | 968 | * | U | 1114 | G | 1115 | G | 1117 | * | C | 1141 | G | 1142 | A | 1143 | U | 1144 | G | 1145 | C | 1146 | * | G | 1157 | A | 1158 | A | 1159 | C | 1160 | G | 1161 | * | C | 1338 | C | 1339 | * | G | 1365 | A | 1366 | G | 1367 | U | 1368 | A | 1369 | G | 1370 | cWW | tSH | tHW | ntHH | cWW | cWW | cWW | cWH | cWW | cWW | cWW | cSH |
| 2 | J7_8CRE_001 | 8CRE | 0.0398 | 1 | 1 | LSU rRNA | C | 945 | G | 946 | A | 947 | A | 948 | G | 949 | U | 950 | * | A | 963 | G | 964 | * | U | 1110 | G | 1111 | G | 1113 | * | C | 1137 | G | 1138 | A | 1139 | U | 1140 | G | 1141 | C | 1142 | * | G | 1153 | A | 1154 | A | 1155 | C | 1156 | G | 1157 | * | C | 1334 | C | 1335 | * | G | 1361 | A | 1362 | G | 1363 | U | 1364 | A | 1365 | G | 1366 | cWW | tSH | tHW | tHH | cWW | cWW | cWW | cWH | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAGU*AG*UGGG*CGAUGC*GAACGCCGAGUAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAG**GG*GAUG*AACAGUA | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-F-F-cWW-cWW-cWW-cWW-F-F-cWW-cWH-F-F-cWW-F
- Heat map statistics
- Min 0.04 | Avg 0.02 | Max 0.04
Coloring options: