Equivalence class DNA_1.5_17936.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1EM0|1|A+ 1EM0|1|B (rep) | DNA (5'-D(*(CBR)P*CP*TP*AP*GP*G)-3') | COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN | X-ray diffraction | 0.9 | 12 | 2000-08-21 | ||||
| 2 | 1EM0|1|C+ 1EM0|1|D | DNA (5'-D(*(CBR)P*CP*TP*AP*GP*G)-3') | COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN | X-ray diffraction | 0.9 | 12 | 2000-08-21 | ||||
| 3 | 1M69|1|A | 5'-D(*CP*GP*TP*AP*CP*G)-3' | Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2 | X-ray diffraction | 1.1 | 6 | 2003-08-19 | ||||
| 4 | 1O0K|1|A | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of the First Parallel DNA Quadruplex-drug Complex | X-ray diffraction | 1.17 | 6 | 2003-04-15 | ||||
| 5 | 1O0K|1|B | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of the First Parallel DNA Quadruplex-drug Complex | X-ray diffraction | 1.17 | 6 | 2003-04-15 | ||||
| 6 | 1O0K|1|C | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of the First Parallel DNA Quadruplex-drug Complex | X-ray diffraction | 1.17 | 6 | 2003-04-15 | ||||
| 7 | 1O0K|1|D | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of the First Parallel DNA Quadruplex-drug Complex | X-ray diffraction | 1.17 | 6 | 2003-04-15 | ||||
| 8 | 3FT6|1|A+ 3FT6|1|B | 5'-D(*CP*GP*AP*TP*CP*G)-3' | Crystal Structure of Proflavine in Complex with a DNA hexamer duplex | X-ray diffraction | 1.12 | 12 | 2010-02-02 | ||||
| 9 | 2O4F|1|A | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 10 | 2O4F|1|B | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 11 | 2O4F|1|C | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 12 | 2O4F|1|D | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 13 | 2O4F|1|E | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 14 | 2O4F|1|F | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 15 | 2O4F|1|G | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 16 | 2O4F|1|H | 5'-D(*TP*GP*GP*GP*GP*T)-3' | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-ray diffraction | 1.5 | 6 | 2007-05-22 | ||||
| 17 | 1XCS|1|A+ 1XCS|1|B | 5'-D(*CP*GP*TP*AP*CP*G)-3' | structure of oligonucleotide/drug complex | X-ray diffraction | 1.4 | 12 | 2005-07-19 | ||||
| 18 | 1Z3F|1|A+ 1Z3F|1|B | 5'-D(*CP*GP*AP*TP*CP*G)-3' | Structure of ellipticine in complex with a 6-bp DNA | X-ray diffraction | 1.5 | 12 | 2005-07-19 | ||||
| 19 | 1R68|1|A | 5'-D(*CP*GP*AP*TP*CP*G)-3' | Role of the amino sugar in DNA binding of disaccharide anthracyclines: crystal structure of MAR70/d(CGATCG) complex | X-ray diffraction | 1.2 | 6 | 2005-02-22 | ||||
| 20 | 352D|1|A | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 21 | 352D|1|B | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 22 | 352D|1|C | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 5 | 1997-11-10 | ||||
| 23 | 352D|1|D | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 24 | 352D|1|E | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 25 | 352D|1|F | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 26 | 352D|1|G | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 27 | 352D|1|H | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 28 | 352D|1|I | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 29 | 352D|1|J | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 30 | 352D|1|L | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 31 | 352D|1|M | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 32 | 352D|1|N | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 33 | 352D|1|O | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 34 | 352D|1|P | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-ray diffraction | 0.95 | 6 | 1997-11-10 | ||||
| 35 | 1FD5|1|A+ 1FD5|1|B | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX) | X-ray diffraction | 1.1 | 12 | 2000-08-07 | ||||
| 36 | 1D11|1|A | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | INTERACTIONS BETWEEN AN ANTHRACYCLINE ANTIBIOTIC AND DNA MOLECULAR STRUCTURE OF DAUNOMYCIN COMPLEXED TO D(CPGPTPAPCPG) AT 1.2-ANGSTROMS RESOLUTION | X-ray diffraction | 1.18 | 6 | 1990-10-15 | ||||
| 37 | 244D|1|A | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 38 | 367D|1|A+ 367D|1|B | 5'-D(*CP*GP*(BRU)P*AP*CP*G)-3' | 1.2 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/5-BROMO-9-AMINO-DACA COMPLEX | X-ray diffraction | 1.2 | 12 | 2003-03-04 | ||||
| 39 | 244D|1|B | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 40 | 244D|1|C | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 41 | 244D|1|D | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 42 | 244D|1|E | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 43 | 244D|1|F | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 44 | 244D|1|G | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 45 | 244D|1|H | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 46 | 244D|1|I | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 47 | 244D|1|J | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 48 | 244D|1|K | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 49 | 244D|1|L | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 50 | 244D|1|M | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 51 | 244D|1|N | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 52 | 244D|1|O | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 53 | 244D|1|P | DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-ray diffraction | 1.2 | 6 | 1996-02-23 | ||||
| 54 | 1D35|1|A | DNA (5'-D(*CP*GP*TP*(A40)P*CP*G)-3') | FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC | X-ray diffraction | 1.3 | 6 | 1992-04-15 | ||||
| 55 | 366D|1|A | DNA (5'-D(*CP*GP*(BRU)P*AP*CP*G)-3') | 1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX | X-ray diffraction | 1.3 | 6 | 1999-04-06 | ||||
| 56 | 1P20|1|A | 5'-D(*CP*GP*AP*TP*CP*G)-3' | Surprising Roles of Electrostatic Interactions in DNA-Ligand Complexes | X-ray diffraction | 1.34 | 6 | 2003-05-13 | ||||
| 57 | 151D|1|A | DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES | X-ray diffraction | 1.4 | 6 | 1994-05-04 | ||||
| 58 | 2D34|1|A | 5'-D(*CP*GP*TP*(A35)P*CP*G)-3' | FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY: HPLC AND X-RAY DIFFRACTION STUDIES | X-ray diffraction | 1.4 | 6 | 1992-04-15 | ||||
| 59 | 152D|1|A | DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES | X-ray diffraction | 1.4 | 6 | 1994-05-04 | ||||
| 60 | 224D|1|A+ 224D|1|B | DNA (5'-D(*TP*GP*AP*TP*CP*A)-3') | DNA-DRUG REFINEMENT: A COMPARISON OF THE PROGRAMS NUCLSQ, PROLSQ, SHELXL93 AND X-PLOR, USING THE LOW TEMPERATURE D(TGATCA)-NOGALAMYCIN STRUCTURE | X-ray diffraction | 1.4 | 12 | 1995-11-14 | ||||
| 61 | 1K9G|1|A | 5'-D(*CP*CP*TP*AP*GP*G)-3' | Crystal Structure of the Complex of Cryptolepine-d(CCTAGG)2 | X-ray diffraction | 1.4 | 6 | 2001-11-30 | ||||
| 62 | 1D54|1|A | DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') | ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN | X-ray diffraction | 1.4 | 6 | 1993-04-15 | ||||
| 63 | 245D|1|A+ 245D|1|B | DNA (5'-D(*TP*GP*AP*TP*CP*A)-3') | DNA-DRUG REFINEMENT: A COMPARISON OF THE PROGRAMS NUCLSQ, PROLSQ, SHELXL93 AND X-PLOR, USING THE LOW TEMPERATURE D(TGATCA)-NOGALAMYCIN STRUCTURE | X-ray diffraction | 1.4 | 12 | 1996-02-07 | ||||
| 64 | 1IH6|1|A+ 1IH6|1|B | 5'-D(*GP*GP*(CBR)P*GP*CP*C)-3' | Multi-Conformation Crystal Structure of GGBr5CGCC | X-ray diffraction | 1.45 | 12 | 2001-06-18 | ||||
| 65 | 1IH6|1|C+ 1IH6|1|D | 5'-D(*GP*GP*(CBR)P*GP*CP*C)-3' | Multi-Conformation Crystal Structure of GGBr5CGCC | X-ray diffraction | 1.45 | 12 | 2001-06-18 | ||||
| 66 | 1IH6|1|E+ 1IH6|1|F | 5'-D(*GP*GP*(CBR)P*GP*CP*C)-3' | Multi-Conformation Crystal Structure of GGBr5CGCC | X-ray diffraction | 1.45 | 12 | 2001-06-18 | ||||
| 67 | 1IH6|1|G+ 1IH6|1|H | 5'-D(*GP*GP*(CBR)P*GP*CP*C)-3' | Multi-Conformation Crystal Structure of GGBr5CGCC | X-ray diffraction | 1.45 | 12 | 2001-06-18 | ||||
| 68 | 2DES|1|A+ 2DES|1|B | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | INTERACTIONS BETWEEN MORPHOLINYL ANTHRACYCLINES AND DNA: THE CRYSTAL STRUCTURE OF A MORPHOLINO DOXORUBICIN BOUND TO D(CGTACG) | X-ray diffraction | 1.5 | 12 | 1993-07-15 | ||||
| 69 | 1D14|1|A | DNA (5'-D(*CP*GP*TP*(AS)P*CP*G)-3') | STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE | X-ray diffraction | 1.5 | 6 | 1990-10-15 | ||||
| 70 | 1DA0|1|A | DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED WITH DAUNOMYCIN | X-ray diffraction | 1.5 | 6 | 1993-07-15 | ||||
| 71 | 1D10|1|A | DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN | X-ray diffraction | 1.5 | 6 | 1990-10-15 | ||||
| 72 | 308D|1|A+ 308D|1|B | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | BINDING OF DAUNOMYCIN TO B-D-GLUCOSYLATED DNA FOUND IN PROTOZOA TRYPANOSOMA BRUCEI STUDIED BY X-RAY CRYSTALLOGRAPH | X-ray diffraction | 1.5 | 12 | 1997-01-21 | ||||
| 73 | 1IMS|1|A | DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | MOLECULAR STRUCTURE OF THE HALOGENATED ANTI-CANCER DRUG IODODOXORUBICIN COMPLEXED WITH D(TGTACA) AND D(CGATCG) | X-ray diffraction | 1.5 | 6 | 1996-04-04 | ||||
| 74 | 1D15|1|A | DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') | TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN AND OTHER DNA: ANTHRACYCLINE COMPLEXES | X-ray diffraction | 1.5 | 6 | 1991-07-15 | ||||
| 75 | 1D36|1|A | DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') | FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC | X-ray diffraction | 1.5 | 6 | 1992-04-15 | ||||
| 76 | 1D33|1|A | 5'-D(*CP*GP*CP*(G49)P*CP*G)-3' | Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-RAY diffraction studies | X-ray diffraction | 1.5 | 6 | 1992-04-15 | ||||
| 77 | 1SX5|1|C+ 1SX5|1|F | 5'-D(*AP*AP*AP*GP*AP*T)-3', 5'-D(P*AP*TP*CP*TP*T)-3' | K38A EcoRV bound to cleaved DNA and Mn2+: P1 crystal form | X-ray diffraction | 1.5 | 11 | 2004-04-06 | ||||
| 78 | 1SX5|1|E+ 1SX5|1|D | 5'-D(*AP*AP*AP*GP*AP*T)-3', 5'-D(P*AP*TP*CP*TP*T)-3' | K38A EcoRV bound to cleaved DNA and Mn2+: P1 crystal form | X-ray diffraction | 1.5 | 11 | 2004-04-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1Z3F|1|A+ 1Z3F|1|B | Structure of ellipticine in complex with a 6-bp DNA | X-RAY DIFFRACTION | 1.5 | 12 | double helix,structure | ||
| 2 | 3FT6|1|A+ 3FT6|1|B | Crystal Structure of Proflavine in Complex with a DNA hexamer duplex | X-RAY DIFFRACTION | 1.12 | 12 | double helix,structure | ||
| 3 | 366D|1|A | 1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX | X-RAY DIFFRACTION | 1.3 | 6 | B-form double helix,double helix,structure | ||
| 4 | 367D|1|A+ 367D|1|B | 1.2 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/5-BROMO-9-AMINO-DACA COMPLEX | X-RAY DIFFRACTION | 1.2 | 12 | B-form double helix,double helix,structure | ||
| 5 | 1M69|1|A | Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2 | X-RAY DIFFRACTION | 1.1 | 6 | B-form double helix,double helix,structure | ||
| 6 | 1K9G|1|A | Crystal Structure of the Complex of Cryptolepine-d(CCTAGG)2 | X-RAY DIFFRACTION | 1.4 | 6 | double helix,structure | ||
| 7 | 245D|1|A+ 245D|1|B | DNA-DRUG REFINEMENT: A COMPARISON OF THE PROGRAMS NUCLSQ, PROLSQ, SHELXL93 AND X-PLOR, USING THE LOW TEMPERATURE D(TGATCA)-NOGALAMYCIN STRUCTURE | X-RAY DIFFRACTION | 1.4 | 12 | B-form double helix,double helix,structure | ||
| 8 | 224D|1|A+ 224D|1|B | DNA-DRUG REFINEMENT: A COMPARISON OF THE PROGRAMS NUCLSQ, PROLSQ, SHELXL93 AND X-PLOR, USING THE LOW TEMPERATURE D(TGATCA)-NOGALAMYCIN STRUCTURE | X-RAY DIFFRACTION | 1.4 | 12 | B-form double helix,double helix,structure | ||
| 9 | 2DES|1|A+ 2DES|1|B | INTERACTIONS BETWEEN MORPHOLINYL ANTHRACYCLINES AND DNA: THE CRYSTAL STRUCTURE OF A MORPHOLINO DOXORUBICIN BOUND TO D(CGTACG) | X-RAY DIFFRACTION | 1.5 | 12 | B-form double helix,double helix,structure | ||
| 10 | 1D54|1|A | ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN | X-RAY DIFFRACTION | 1.4 | 6 | B-form double helix,double helix,structure | ||
| 11 | 1D36|1|A | FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 12 | 1D11|1|A | INTERACTIONS BETWEEN AN ANTHRACYCLINE ANTIBIOTIC AND DNA MOLECULAR STRUCTURE OF DAUNOMYCIN COMPLEXED TO D(CPGPTPAPCPG) AT 1.2-ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 1.18 | 6 | B-form double helix,double helix,structure | ||
| 13 | 1D35|1|A | FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC | X-RAY DIFFRACTION | 1.3 | 6 | B-form double helix,double helix,structure | ||
| 14 | 1R68|1|A | Role of the amino sugar in DNA binding of disaccharide anthracyclines: crystal structure of MAR70/d(CGATCG) complex | X-RAY DIFFRACTION | 1.2 | 6 | B-form double helix,double helix,structure | ||
| 15 | 1D15|1|A | TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN AND OTHER DNA: ANTHRACYCLINE COMPLEXES | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 16 | 1D10|1|A | STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 17 | 152D|1|A | DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES | X-RAY DIFFRACTION | 1.4 | 6 | B-form double helix,double helix,structure | ||
| 18 | 151D|1|A | DIVERSITY OF WATER RING SIZE AT DNA INTERFACES: HYDRATION AND DYNAMICS OF DNA-ANTHRACYCLINE COMPLEXES | X-RAY DIFFRACTION | 1.4 | 6 | B-form double helix,double helix,structure | ||
| 19 | 1P20|1|A | Surprising Roles of Electrostatic Interactions in DNA-Ligand Complexes | X-RAY DIFFRACTION | 1.34 | 6 | B-form double helix,double helix,structure | ||
| 20 | 1IMS|1|A | MOLECULAR STRUCTURE OF THE HALOGENATED ANTI-CANCER DRUG IODODOXORUBICIN COMPLEXED WITH D(TGTACA) AND D(CGATCG) | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 21 | 1DA0|1|A | DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED WITH DAUNOMYCIN | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 22 | 1D33|1|A | Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-RAY diffraction studies | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 23 | 2D34|1|A | FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY: HPLC AND X-RAY DIFFRACTION STUDIES | X-RAY DIFFRACTION | 1.4 | 6 | B-form double helix,double helix,structure | ||
| 24 | 308D|1|A+ 308D|1|B | BINDING OF DAUNOMYCIN TO B-D-GLUCOSYLATED DNA FOUND IN PROTOZOA TRYPANOSOMA BRUCEI STUDIED BY X-RAY CRYSTALLOGRAPH | X-RAY DIFFRACTION | 1.5 | 12 | B-form double helix,double helix,structure | ||
| 25 | 1D14|1|A | STRUCTURE OF 11-DEOXYDAUNOMYCIN BOUND TO DNA CONTAINING A PHOSPHOROTHIOATE | X-RAY DIFFRACTION | 1.5 | 6 | B-form double helix,double helix,structure | ||
| 26 | 1EM0|1|C+ 1EM0|1|D | COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN | X-RAY DIFFRACTION | 0.9 | 12 | B-form double helix,double helix,structure | ||
| 27 | 1EM0|1|A+ 1EM0|1|B | COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN | X-RAY DIFFRACTION | 0.9 | 12 | B-form double helix,double helix,structure | ||
| 28 | 1SX5|1|C+ 1SX5|1|F | K38A EcoRV bound to cleaved DNA and Mn2+: P1 crystal form | X-RAY DIFFRACTION | 1.5 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 29 | 1SX5|1|E+ 1SX5|1|D | K38A EcoRV bound to cleaved DNA and Mn2+: P1 crystal form | X-RAY DIFFRACTION | 1.5 | 11 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 30 | 1IH6|1|C+ 1IH6|1|D | Multi-Conformation Crystal Structure of GGBr5CGCC | X-RAY DIFFRACTION | 1.45 | 12 | A-form double helix,double helix,structure | ||
| 31 | 1IH6|1|E+ 1IH6|1|F | Multi-Conformation Crystal Structure of GGBr5CGCC | X-RAY DIFFRACTION | 1.45 | 12 | A-form double helix,double helix,structure | ||
| 32 | 1IH6|1|A+ 1IH6|1|B | Multi-Conformation Crystal Structure of GGBr5CGCC | X-RAY DIFFRACTION | 1.45 | 12 | A-form double helix,double helix,structure | ||
| 33 | 1IH6|1|G+ 1IH6|1|H | Multi-Conformation Crystal Structure of GGBr5CGCC | X-RAY DIFFRACTION | 1.45 | 12 | A-form double helix,double helix,structure | ||
| 34 | 2O4F|1|A | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 35 | 2O4F|1|F | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 36 | 2O4F|1|E | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 37 | 2O4F|1|H | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 38 | 2O4F|1|D | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 39 | 1FD5|1|A+ 1FD5|1|B | BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX) | X-RAY DIFFRACTION | 1.1 | 12 | B-form double helix,double helix,structure | ||
| 40 | 1XCS|1|A+ 1XCS|1|B | structure of oligonucleotide/drug complex | X-RAY DIFFRACTION | 1.4 | 12 | B-form double helix,double helix,structure | ||
| 41 | 352D|1|D | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 42 | 244D|1|D | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 43 | 244D|1|M | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 44 | 352D|1|M | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 45 | 352D|1|B | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 46 | 244D|1|B | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 47 | 352D|1|O | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 48 | 352D|1|H | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 49 | 244D|1|O | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 50 | 352D|1|A | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 51 | 244D|1|A | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 52 | 352D|1|N | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 53 | 244D|1|N | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 54 | 244D|1|K | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 55 | 244D|1|G | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 56 | 244D|1|I | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 57 | 352D|1|I | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 58 | 352D|1|G | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 59 | 1O0K|1|D | Structure of the First Parallel DNA Quadruplex-drug Complex | X-RAY DIFFRACTION | 1.17 | 6 | quadruplex,structure | ||
| 60 | 1O0K|1|B | Structure of the First Parallel DNA Quadruplex-drug Complex | X-RAY DIFFRACTION | 1.17 | 6 | quadruplex,structure | ||
| 61 | 244D|1|E | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 62 | 352D|1|E | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 63 | 352D|1|C | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 5 | quadruplex,structure | ||
| 64 | 244D|1|P | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 65 | 352D|1|P | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 66 | 244D|1|C | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 67 | 2O4F|1|G | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 68 | 1O0K|1|A | Structure of the First Parallel DNA Quadruplex-drug Complex | X-RAY DIFFRACTION | 1.17 | 6 | quadruplex,structure | ||
| 69 | 2O4F|1|C | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 70 | 2O4F|1|B | Structure of a parallel-stranded guanine tetraplex crystallised with monovalent ions | X-RAY DIFFRACTION | 1.5 | 6 | quadruplex,structure | ||
| 71 | 352D|1|J | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 72 | 244D|1|J | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 73 | 1O0K|1|C | Structure of the First Parallel DNA Quadruplex-drug Complex | X-RAY DIFFRACTION | 1.17 | 6 | quadruplex,structure | ||
| 74 | 244D|1|H | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 75 | 244D|1|L | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 76 | 244D|1|F | THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX | X-RAY DIFFRACTION | 1.2 | 6 | quadruplex,structure | ||
| 77 | 352D|1|F | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure | ||
| 78 | 352D|1|L | THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 0.95 | 6 | quadruplex,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: