Equivalence class DNA_1.5_26038.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1VRO|1|A+ 1VRO|1|B (rep) | 5'-D(*CP*(GMS)P*CP*GP*CP*G)-3' | Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure | X-ray diffraction | 1.1 | 12 | 2005-04-19 | ||||
| 2 | 2F8W|1|A+ 2F8W|1|B | 5'-D(*CP*AP*CP*GP*TP*G)-3' | Crystal structure of d(CACGTG)2 | X-ray diffraction | 1.2 | 12 | 2006-01-31 | ||||
| 3 | 2OBZ|1|A+ 2OBZ|1|B | 5'-D(*CP*GP*CP*GP*(BRU)P*G)-3' | Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) | X-ray diffraction | 1.1 | 12 | 2007-12-25 | ||||
| 4 | 1WOE|1|A+ 1WOE|1|B | Z-DNA hexamer | X-ray structure of a Z-DNA hexamer d(CGCGCG) | X-ray diffraction | 1.5 | 12 | 2005-07-26 | ||||
| 5 | 1I0T|1|A+ 1I0T|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | 0.6 A STRUCTURE OF Z-DNA CGCGCG | X-ray diffraction | 0.6 | 12 | 2001-04-04 | ||||
| 6 | 2DCG|1|A+ 2DCG|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION | X-ray diffraction | 0.9 | 12 | 1989-01-09 | ||||
| 7 | 1ICK|1|A+ 1ICK|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 | X-ray diffraction | 0.95 | 12 | 2001-04-12 | ||||
| 8 | 293D|1|A+ 293D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX | X-ray diffraction | 1 | 12 | 1996-12-02 | ||||
| 9 | 292D|1|A+ 292D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | X-ray diffraction | 1 | 12 | 1996-12-02 | ||||
| 10 | 1DCG|1|A+ 1DCG|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) | X-ray diffraction | 1 | 12 | 1989-01-09 | ||||
| 11 | 1D48|1|A+ 1D48|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION | X-ray diffraction | 1 | 12 | 1992-04-15 | ||||
| 12 | 336D|1|A+ 336D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | X-ray diffraction | 1 | 12 | 1998-04-10 | ||||
| 13 | 1DJ6|1|A+ 1DJ6|1|B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE | X-ray diffraction | 1 | 12 | 1999-12-18 | ||||
| 14 | 131D|1|A+ 131D|1|B | DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') | THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE | X-ray diffraction | 1 | 12 | 1993-10-15 | ||||
| 15 | 2ELG|1|A+ 2ELG|1|B | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3') | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | X-ray diffraction | 1 | 12 | 2008-04-01 | ||||
| 16 | 1D39|1|A+ 1D39|1|B | DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3') | COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.2 | 12 | 1992-04-15 | ||||
| 17 | 145D|1|A | DNA (5'-D(*(MCY)P*GP*GP*GP*(5CM)P*G)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 0 | 1994-01-15 | ||||
| 18 | 145D|1|B | DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 0 | 1994-01-15 | ||||
| 19 | 145D|1|C | DNA (5'-D(*(MCY)P*GP*CP*CP*(5CM)P*G)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 0 | 1994-01-15 | ||||
| 20 | 145D|1|D | DNA (5'-D(*(5CM)P*DGP*DGP*DGP*(5CM)P*DG)-3') | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-ray diffraction | 1.25 | 0 | 1994-01-15 | ||||
| 21 | 1D41|1|A | DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3') | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-ray diffraction | 1.3 | 0 | 1992-04-15 | ||||
| 22 | 1D40|1|A | DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3') | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.3 | 0 | 1992-04-15 | ||||
| 23 | 362D|1|A+ 362D|1|B | DNA (5'-D(*TP*GP*CP*GP*CP*A)-3') | THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | X-ray diffraction | 1.3 | 12 | 1997-11-20 | ||||
| 24 | 1D76|1|A+ 1D76|1|B | DNA (5'-D(*CP*GP*UP*(1AP)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | X-ray diffraction | 1.3 | 12 | 1992-09-15 | ||||
| 25 | 1OMK|1|A+ 1OMK|1|B | 5'-D(*CP*AP*CP*GP*(5IU)P*G)-3' | The Crystal Structure of d(CACG(5IU)G) | X-ray diffraction | 1.3 | 12 | 2003-11-04 | ||||
| 26 | 1D40|1|B | DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3') | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-ray diffraction | 1.3 | 0 | 1992-04-15 | ||||
| 27 | 1D41|1|B | DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3') | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-ray diffraction | 1.3 | 0 | 1992-04-15 | ||||
| 28 | 210D|1|A | DNA (5'-D(*CP*GP*TP*(1AP)P*CP*G)-3') | CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE | X-ray diffraction | 1.35 | 6 | 1996-03-22 | ||||
| 29 | 1DN5|1|A | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.4 | 0 | 1987-04-16 | ||||
| 30 | 1DN5|1|B | DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-ray diffraction | 1.4 | 0 | 1987-04-16 | ||||
| 31 | 417D|1|A+ 417D|1|B | DNA (5'-D(*CP*AP*CP*GP*(C46)P*G)-3') | A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE | X-ray diffraction | 1.5 | 12 | 1998-09-30 | ||||
| 32 | 1DNF|1|A+ 1DNF|1|B | DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3') | EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) | X-ray diffraction | 1.5 | 12 | 1990-10-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2OBZ|1|A+ 2OBZ|1|B | Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) | X-RAY DIFFRACTION | 1.1 | 12 | Z-form double helix,double helix,structure | ||
| 2 | 1DNF|1|A+ 1DNF|1|B | EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG) | X-RAY DIFFRACTION | 1.5 | 12 | Z-form double helix,double helix,structure | ||
| 3 | 417D|1|A+ 417D|1|B | A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE | X-RAY DIFFRACTION | 1.5 | 12 | Z-form double helix,double helix,structure | ||
| 4 | 145D|1|C | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 0 | Z-form double helix,double helix,structure | ||
| 5 | 1D40|1|A | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.3 | 0 | Z-form double helix,double helix,structure | ||
| 6 | 1D41|1|A | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-RAY DIFFRACTION | 1.3 | 0 | Z-form double helix,double helix,structure | ||
| 7 | 1I0T|1|A+ 1I0T|1|B | 0.6 A STRUCTURE OF Z-DNA CGCGCG | X-RAY DIFFRACTION | 0.6 | 12 | Z-form double helix,double helix,structure | ||
| 8 | 131D|1|A+ 131D|1|B | THE LOW-TEMPERATURE CRYSTAL STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA REVEALS BINDING OF A SPERMINE MOLECULE IN THE MINOR GROOVE | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 9 | 1D48|1|A+ 1D48|1|B | STRUCTURE OF THE PURE-SPERMINE FORM OF Z-DNA (MAGNESIUM FREE) AT 1 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 10 | 1WOE|1|A+ 1WOE|1|B | X-ray structure of a Z-DNA hexamer d(CGCGCG) | X-RAY DIFFRACTION | 1.5 | 12 | Z-form double helix,double helix,structure | ||
| 11 | 2F8W|1|A+ 2F8W|1|B | Crystal structure of d(CACGTG)2 | X-RAY DIFFRACTION | 1.2 | 12 | Z-form double helix,double helix,structure | ||
| 12 | 145D|1|A | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 0 | Z-form double helix,double helix,structure | ||
| 13 | 145D|1|B | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 0 | Z-form double helix,double helix,structure | ||
| 14 | 1D39|1|A+ 1D39|1|B | COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.2 | 12 | Z-form double helix,double helix,structure | ||
| 15 | 2ELG|1|A+ 2ELG|1|B | The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 16 | 1DCG|1|A+ 1DCG|1|B | THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 17 | 292D|1|A+ 292D|1|B | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE:THE CRYSTAL STRUCTURE OF THE D(CG)3 AND N-(2-AMINOETHYL)-1,4-DIAMINOBUTANE COMPLEX | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 18 | 293D|1|A+ 293D|1|B | INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 19 | 336D|1|A+ 336D|1|B | INTERACTION BETWEEN LEFT-HANDED Z-DNA AND POLYAMINE-3 THE CRYSTAL STRUCTURE OF THE D(CG)3 AND THERMOSPERMINE COMPLEX | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 20 | 2DCG|1|A+ 2DCG|1|B | MOLECULAR STRUCTURE OF A LEFT-HANDED DOUBLE HELICAL DNA FRAGMENT AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 0.9 | 12 | Z-form double helix,double helix,structure | ||
| 21 | 1ICK|1|A+ 1ICK|1|B | LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 | X-RAY DIFFRACTION | 0.95 | 12 | Z-form double helix,double helix,structure | ||
| 22 | 1D76|1|A+ 1D76|1|B | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 23 | 1DJ6|1|A+ 1DJ6|1|B | COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE | X-RAY DIFFRACTION | 1 | 12 | Z-form double helix,double helix,structure | ||
| 24 | 1DN5|1|A | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.4 | 0 | Z-form double helix,double helix,structure | ||
| 25 | 1DN5|1|B | SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES | X-RAY DIFFRACTION | 1.4 | 0 | Z-form double helix,double helix,structure | ||
| 26 | 1D41|1|B | STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG) | X-RAY DIFFRACTION | 1.3 | 0 | Z-form double helix,double helix,structure | ||
| 27 | 1D40|1|B | BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2 | X-RAY DIFFRACTION | 1.3 | 0 | Z-form double helix,double helix,structure | ||
| 28 | 145D|1|D | Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) | X-RAY DIFFRACTION | 1.25 | 0 | Z-form double helix,double helix,structure | ||
| 29 | 1OMK|1|A+ 1OMK|1|B | The Crystal Structure of d(CACG(5IU)G) | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 30 | 362D|1|A+ 362D|1|B | THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | X-RAY DIFFRACTION | 1.3 | 12 | Z-form double helix,double helix,structure | ||
| 31 | 1VRO|1|A+ 1VRO|1|B | Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure | X-RAY DIFFRACTION | 1.1 | 12 | Z-form double helix,double helix,structure | ||
| 32 | 210D|1|A | CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A)CG] AND ITS PLATINATED DERIVATIVE | X-RAY DIFFRACTION | 1.35 | 6 | Z-form double helix,double helix,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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