Equivalence class DNA_1.5_31290.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 476D|1|A+ 476D|1|B (rep) | 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-ray diffraction | 1.3 | 22 | 1999-07-19 | ||||
| 2 | 3NDH|1|C+ 3NDH|1|D | DNA (5'-D(*C*CP*AP*TP*CP*GP*CP*GP*TP*AP*C)-3'), DNA (5'-D(*G*GP*TP*AP*CP*GP*CP*GP*AP*TP*G)-3') | Restriction endonuclease in complex with substrate DNA | X-ray diffraction | 1.3 | 20 | 2010-07-28 | ||||
| 3 | 2OAA|1|C+ 2OAA|1|D | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 21 | 2007-02-20 | ||||
| 4 | 2OAA|1|E+ 2OAA|1|F | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 22 | 2007-02-20 | ||||
| 5 | 2ODI|1|C+ 2ODI|1|D | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 22 | 2007-03-20 | ||||
| 6 | 2ODI|1|E+ 2ODI|1|F | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 22 | 2007-03-20 | ||||
| 7 | 3GOX|1|C+ 3GOX|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-ray diffraction | 1.5 | 20 | 2009-04-28 | ||||
| 8 | 2AVH|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3' | G4T3G4 dimeric quadruplex structure | X-ray diffraction | 1.5 | 11 | 2006-03-28 | ||||
| 9 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | 5'-D(*AP*TP*AP*TP*CP*T)-3', 5'-D(*AP*TP*CP*TP*GP*AP*AP*GP*TP*AP*T)-3', 5'-D(P*(3DR)P*AP*GP*AP*T)-3' | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-ray diffraction | 1.45 | 22 | 2007-11-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2ODI|1|C+ 2ODI|1|D | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 2 | 2ODI|1|E+ 2ODI|1|F | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 3 | 3NDH|1|C+ 3NDH|1|D | Restriction endonuclease in complex with substrate DNA | X-RAY DIFFRACTION | 1.3 | 20 | double helix,structure | enzyme,hydrolase,nuclease | |
| 4 | 2OAA|1|E+ 2OAA|1|F | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 22 | double helix,structure | enzyme,hydrolase,nuclease | |
| 5 | 2OAA|1|C+ 2OAA|1|D | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 21 | double helix,structure | enzyme,hydrolase,nuclease | |
| 6 | 476D|1|A+ 476D|1|B | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-RAY DIFFRACTION | 1.3 | 22 | B-form double helix,double helix,structure | ||
| 7 | 3GOX|1|C+ 3GOX|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-RAY DIFFRACTION | 1.5 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 8 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 9 | 2AVH|1|A | G4T3G4 dimeric quadruplex structure | X-RAY DIFFRACTION | 1.5 | 11 | quadruplex,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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