Equivalence class DNA_1.5_68331.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3OMJ|1|A+ 3OMJ|1|B (rep) | 5'-D(*CP*(C38)P*AP*GP*TP*AP*CP*TP*GP*G)-3' | Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding | X-ray diffraction | 0.95 | 20 | 2010-09-08 | ||||
| 2 | 1KGK|1|A+ 1KGK|1|B | 5'-D(*GP*(GCK)P*GP*TP*AP*TP*AP*CP*GP*C)-3' | Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp | X-ray diffraction | 1 | 20 | 2001-12-21 | ||||
| 3 | 1DPL|1|A+ 1DPL|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE | X-ray diffraction | 0.83 | 20 | 2000-04-04 | ||||
| 4 | 3I5E|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3' | Allosteric Modulation of DNA by Small Molecules | X-ray diffraction | 0.98 | 10 | 2009-07-28 | ||||
| 5 | 1EN8|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | 1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-ray diffraction | 0.985 | 10 | 2000-09-25 | ||||
| 6 | 3I5L|1|A+ 3I5L|1|B | 5'-D(*CP*CP*AP*GP*GP*(C38)P*CP*TP*GP*G)-3' | Allosteric Modulation of DNA by Small Molecules | X-ray diffraction | 1.18 | 20 | 2009-07-28 | ||||
| 7 | 1ENE|1|A | DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-ray diffraction | 0.985 | 10 | 2000-09-25 | ||||
| 8 | 3EY2|1|A+ 3EY2|1|B | 5'-D(*GP*CP*GP*TP*AP*(USM)P*AP*CP*GP*C)-3' | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-ray diffraction | 1.04 | 20 | 2009-04-28 | ||||
| 9 | 1EN9|1|A | DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-ray diffraction | 0.985 | 10 | 2000-09-25 | ||||
| 10 | 1EN3|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-ray diffraction | 0.985 | 10 | 2000-09-25 | ||||
| 11 | 1MLX|1|A+ 1MLX|1|B | 5'-D(*GP*CP*GP*TP*AP*SMTP*AP*CP*GP*C)-3' | Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex | X-ray diffraction | 1.25 | 20 | 2002-12-04 | ||||
| 12 | 3OZ5|1|A+ 3OZ5|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(UMX)P*AP*CP*GP*C)-3') | S-Methyl Carbocyclic LNA | X-ray diffraction | 1.36 | 20 | 2010-11-24 | ||||
| 13 | 2FIJ|1|A+ 2FIJ|1|B | 5'-D(*GP*CP*GP*TP*(A2M)P*(UAR)P*AP*CP*GP*C)-3' | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) | X-ray diffraction | 1.19 | 20 | 2006-05-23 | ||||
| 14 | 1M77|1|A | 5'-D(*CP*CP*CP*GP*AP*TP*CP*GP*GP*G)-3' | Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA | X-ray diffraction | 1.25 | 10 | 2003-01-07 | ||||
| 15 | 1R3G|1|A+ 1R3G|1|B | 5'-D(*GP*CP*GP*TP*AP*(GMU)P*AP*CP*GP*C)-3') | 1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues | X-ray diffraction | 1.16 | 20 | 2003-10-21 | ||||
| 16 | 1PWF|1|A+ 1PWF|1|B | 5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3' | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | X-ray diffraction | 1.16 | 20 | 2004-07-13 | ||||
| 17 | 1I5W|1|A+ 1I5W|1|B | 5'-D(*GP*CP*GP*TP*AP*(TLN)P*AP*CP*GP*C)-3' | A-DNA DECAMER GCGTA(TLN)ACGC | X-ray diffraction | 1.4 | 20 | 2001-04-04 | ||||
| 18 | 1Y8L|1|A+ 1Y8L|1|B | 5'-D(*GP*CP*GP*TP*AP*(TFE)P*AP*CP*GP*C)-3') | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) | X-ray diffraction | 1.5 | 20 | 2005-06-28 | ||||
| 19 | 1I0G|1|A+ 1I0G|1|B | 5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3' | 1.45 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, MEDIUM NA-SALT | X-ray diffraction | 1.45 | 20 | 2001-04-04 | ||||
| 20 | 1Y8V|1|A+ 1Y8V|1|B | 5'-D(*GP*CP*GP*TP*AP*(P2T)P*AP*CP*GP*C)-3' | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) | X-ray diffraction | 1.5 | 20 | 2005-06-28 | ||||
| 21 | 1I0J|1|A+ 1I0J|1|B | 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' | 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT | X-ray diffraction | 1.06 | 20 | 2001-04-04 | ||||
| 22 | 1I0M|1|A+ 1I0M|1|B | 5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3' | 1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, HIGH RB-SALT | X-ray diffraction | 1.05 | 20 | 2001-04-04 | ||||
| 23 | 1I0K|1|A+ 1I0K|1|B | 5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3' | 1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM CS-SALT | X-ray diffraction | 1.05 | 20 | 2001-04-04 | ||||
| 24 | 1ZF1|1|A+ 1ZF1|1|B | 5'-D(*CP*CP*GP*GP*GP*CP*CP*CP*GP*G)-3' | CCC A-DNA | X-ray diffraction | 1.35 | 20 | 2005-05-10 | ||||
| 25 | 1I0P|1|A+ 1I0P|1|B | 5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3' | 1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)], MEDIUM K-SALT | X-ray diffraction | 1.3 | 20 | 2001-04-04 | ||||
| 26 | 1ZF9|1|A+ 1ZF9|1|B | 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3' | GGG Duplex A-DNA | X-ray diffraction | 1.38 | 20 | 2005-05-10 | ||||
| 27 | 1ZF7|1|A+ 1ZF7|1|B | 5'-D(*CP*CP*GP*TP*CP*GP*AP*CP*GP*G)-3' | GAC Duplex B-DNA | X-ray diffraction | 1.05 | 20 | 2005-05-10 | ||||
| 28 | 2B2B|1|A+ 2B2B|1|B | 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3' | Structural distortions in psoralen cross-linked DNA | X-ray diffraction | 1.5 | 20 | 2006-10-03 | ||||
| 29 | 1ZF8|1|A+ 1ZF8|1|B | 5'-D(*CP*CP*AP*CP*CP*GP*GP*TP*GP*G)-3' | GGT Duplex A-DNA | X-ray diffraction | 1.48 | 20 | 2005-05-10 | ||||
| 30 | 1NVY|1|A+ 1NVY|1|B | d(TCGGTACCGA)4 | Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 | X-ray diffraction | 1.5 | 20 | 2003-02-25 | ||||
| 31 | 1ZF5|1|A | 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3' | GCT duplex B-DNA | X-ray diffraction | 0.99 | 10 | 2005-05-10 | ||||
| 32 | 1ZF0|1|A+ 1ZF0|1|B | 5'-D(*CP*CP*GP*TP*TP*AP*AP*CP*GP*G)-3' | B-DNA | X-ray diffraction | 1.5 | 20 | 2005-05-10 | ||||
| 33 | 1L6B|1|A+ 1L6B|1|B | 5'-D(*CP*CP*GP*GP*TP*AP*CP*(5CM)P*GP*G)-3' | CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG | X-ray diffraction | 1.5 | 20 | 2002-08-07 | ||||
| 34 | 1I0N|1|A+ 1I0N|1|B | 5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3' | 1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM RB-SALT | X-ray diffraction | 1.3 | 20 | 2001-04-04 | ||||
| 35 | 1ZF6|1|A+ 1ZF6|1|B | 5'-D(*CP*CP*CP*CP*AP*TP*GP*GP*GP*G)-3' | TGG DUPLEX A-DNA | X-ray diffraction | 1.5 | 20 | 2005-05-10 | ||||
| 36 | 1ZFF|1|A | 5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3' | TTC Duplex B-DNA | X-ray diffraction | 0.94 | 10 | 2005-05-10 | ||||
| 37 | 3GGK|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3' | Locating monovalent cations in one turn of G/C rich B-DNA | X-ray diffraction | 0.87 | 10 | 2010-03-09 | ||||
| 38 | 1SK5|1|A+ 1SK5|1|B | 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3' | The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition | X-ray diffraction | 0.89 | 20 | 2005-06-21 | ||||
| 39 | 3GGI|1|A | 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3' | Locating monovalent cations in one turn of G/C rich B-DNA | X-ray diffraction | 0.98 | 10 | 2010-03-09 | ||||
| 40 | 440D|1|A+ 440D|1|B | DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-ray diffraction | 1.1 | 20 | 1999-01-15 | ||||
| 41 | 431D|1|A+ 431D|1|B | DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | X-ray diffraction | 1.15 | 20 | 1999-09-15 | ||||
| 42 | 1D8X|1|A+ 1D8X|1|B | 5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS | X-ray diffraction | 1.2 | 20 | 1999-11-05 | ||||
| 43 | 1XUW|1|A+ 1XUW|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(NMT)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.25 | 20 | 2004-12-14 | ||||
| 44 | 1I0Q|1|A+ 1I0Q|1|B | 5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3' | 1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM NA-SALT | X-ray diffraction | 1.3 | 20 | 2001-04-04 | ||||
| 45 | 1XUX|1|A+ 1XUX|1|B | DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.3 | 20 | 2004-12-14 | ||||
| 46 | 1MA8|1|A+ 1MA8|1|B | 5'-D(*GP*CP*GP*TP*AP*UMSP*AP*CP*GP*C)-3' | A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine | X-ray diffraction | 1.3 | 20 | 2002-12-11 | ||||
| 47 | 1D61|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3') | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM | X-ray diffraction | 1.3 | 10 | 1993-04-15 | ||||
| 48 | 232D|1|A | DNA (5'-D(*AP*GP*GP*CP*AP*TP*GP*CP*CP*T)-3') | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | X-ray diffraction | 1.3 | 10 | 1996-03-22 | ||||
| 49 | 3DNB|1|A | DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3') | HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER | X-ray diffraction | 1.3 | 10 | 1989-01-09 | ||||
| 50 | 1XUX|1|C+ 1XUX|1|D | DNA (5'-D(*GP*CP*GP*TP*AP*(NMS)P*AP*CP*GP*C)-3') | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-ray diffraction | 1.3 | 20 | 2004-12-14 | ||||
| 51 | 5DNB|1|A | DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3') | STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G | X-ray diffraction | 1.4 | 10 | 1991-10-15 | ||||
| 52 | 441D|1|A | DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') | synthetic construct | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-ray diffraction | 1.5 | 10 | 1999-01-15 | |||
| 53 | 1D49|1|A+ 1D49|1|B | DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3') | THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G | X-ray diffraction | 1.5 | 20 | 1992-04-15 | ||||
| 54 | 1D23|1|A+ 1D23|1|B | DNA (5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3') | THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS | X-ray diffraction | 1.5 | 20 | 1991-10-15 | ||||
| 55 | 1D9R|1|A+ 1D9R|1|B | 5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3' | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | X-ray diffraction | 1.5 | 20 | 1999-11-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 431D|1|A+ 431D|1|B | 5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' | X-RAY DIFFRACTION | 1.15 | 20 | B-form double helix,double helix,structure | ||
| 2 | 1ENE|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | ||
| 3 | 1ZF5|1|A | GCT duplex B-DNA | X-RAY DIFFRACTION | 0.99 | 10 | B-form double helix,double helix,structure | ||
| 4 | 3I5E|1|A | Allosteric Modulation of DNA by Small Molecules | X-RAY DIFFRACTION | 0.98 | 10 | B-form double helix,double helix,structure | ||
| 5 | 3DNB|1|A | HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER | X-RAY DIFFRACTION | 1.3 | 10 | B-form double helix,double helix,feature,mispair,structure | ||
| 6 | 1EN8|1|A | 1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | ||
| 7 | 1D61|1|A | THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: MONOCLINIC FORM | X-RAY DIFFRACTION | 1.3 | 10 | B-form double helix,double helix,structure | ||
| 8 | 5DNB|1|A | STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G | X-RAY DIFFRACTION | 1.4 | 10 | B-form double helix,double helix,structure | ||
| 9 | 1EN3|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | ||
| 10 | 1ZFF|1|A | TTC Duplex B-DNA | X-RAY DIFFRACTION | 0.94 | 10 | double helix,structure | ||
| 11 | 1ZF0|1|A+ 1ZF0|1|B | B-DNA | X-RAY DIFFRACTION | 1.5 | 20 | B-form double helix,double helix,structure | ||
| 12 | 1ZF7|1|A+ 1ZF7|1|B | GAC Duplex B-DNA | X-RAY DIFFRACTION | 1.05 | 20 | B-form double helix,double helix,structure | ||
| 13 | 3GGI|1|A | Locating monovalent cations in one turn of G/C rich B-DNA | X-RAY DIFFRACTION | 0.98 | 10 | B-form double helix,double helix,structure | ||
| 14 | 3GGK|1|A | Locating monovalent cations in one turn of G/C rich B-DNA | X-RAY DIFFRACTION | 0.87 | 10 | B-form double helix,double helix,structure | ||
| 15 | 1EN9|1|A | 1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM. | X-RAY DIFFRACTION | 0.985 | 10 | B-form double helix,double helix,structure | ||
| 16 | 1D23|1|A+ 1D23|1|B | THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS | X-RAY DIFFRACTION | 1.5 | 20 | B-form double helix,double helix,structure | ||
| 17 | 1D49|1|A+ 1D49|1|B | THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G | X-RAY DIFFRACTION | 1.5 | 20 | B-form double helix,double helix,structure | ||
| 18 | 1SK5|1|A+ 1SK5|1|B | The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition | X-RAY DIFFRACTION | 0.89 | 20 | B-form double helix,double helix,structure | ||
| 19 | 3I5L|1|A+ 3I5L|1|B | Allosteric Modulation of DNA by Small Molecules | X-RAY DIFFRACTION | 1.18 | 20 | B-form double helix,double helix,structure | ||
| 20 | 3OMJ|1|A+ 3OMJ|1|B | Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding | X-RAY DIFFRACTION | 0.95 | 20 | B-form double helix,double helix,structure | ||
| 21 | 1D9R|1|A+ 1D9R|1|B | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS | X-RAY DIFFRACTION | 1.5 | 20 | double helix,feature,mispair,structure | ||
| 22 | 1D8X|1|A+ 1D8X|1|B | CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS | X-RAY DIFFRACTION | 1.2 | 20 | double helix,feature,mispair,structure | ||
| 23 | 1ZF8|1|A+ 1ZF8|1|B | GGT Duplex A-DNA | X-RAY DIFFRACTION | 1.48 | 20 | A-form double helix,double helix,structure | ||
| 24 | 1ZF9|1|A+ 1ZF9|1|B | GGG Duplex A-DNA | X-RAY DIFFRACTION | 1.38 | 20 | A-form double helix,double helix,structure | ||
| 25 | 1ZF1|1|A+ 1ZF1|1|B | CCC A-DNA | X-RAY DIFFRACTION | 1.35 | 20 | A-form double helix,double helix,structure | ||
| 26 | 1XUX|1|A+ 1XUX|1|B | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.3 | 20 | A-form double helix,double helix,structure | ||
| 27 | 2FIJ|1|A+ 2FIJ|1|B | Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) | X-RAY DIFFRACTION | 1.19 | 20 | double helix,structure | ||
| 28 | 1M77|1|A | Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA | X-RAY DIFFRACTION | 1.25 | 10 | A-form double helix,double helix,structure | ||
| 29 | 1PWF|1|A+ 1PWF|1|B | One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA | X-RAY DIFFRACTION | 1.16 | 20 | double helix,structure | ||
| 30 | 440D|1|A+ 440D|1|B | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-RAY DIFFRACTION | 1.1 | 20 | A-form double helix,double helix,structure | ||
| 31 | 1I5W|1|A+ 1I5W|1|B | A-DNA DECAMER GCGTA(TLN)ACGC | X-RAY DIFFRACTION | 1.4 | 20 | A-form double helix,double helix,structure | ||
| 32 | 1XUX|1|C+ 1XUX|1|D | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.3 | 20 | A-form double helix,double helix,structure | ||
| 33 | 1Y8V|1|A+ 1Y8V|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*) | X-RAY DIFFRACTION | 1.5 | 20 | A-form double helix,double helix,structure | ||
| 34 | 1XUW|1|A+ 1XUW|1|B | Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs | X-RAY DIFFRACTION | 1.25 | 20 | A-form double helix,double helix,structure | ||
| 35 | 1I0M|1|A+ 1I0M|1|B | 1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, HIGH RB-SALT | X-RAY DIFFRACTION | 1.05 | 20 | A-form double helix,double helix,structure | ||
| 36 | 1I0J|1|A+ 1I0J|1|B | 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT | X-RAY DIFFRACTION | 1.06 | 20 | A-form double helix,double helix,structure | ||
| 37 | 1I0K|1|A+ 1I0K|1|B | 1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM CS-SALT | X-RAY DIFFRACTION | 1.05 | 20 | A-form double helix,double helix,structure | ||
| 38 | 1I0N|1|A+ 1I0N|1|B | 1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM RB-SALT | X-RAY DIFFRACTION | 1.3 | 20 | A-form double helix,double helix,structure | ||
| 39 | 1I0P|1|A+ 1I0P|1|B | 1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)], MEDIUM K-SALT | X-RAY DIFFRACTION | 1.3 | 20 | A-form double helix,double helix,structure | ||
| 40 | 1I0Q|1|A+ 1I0Q|1|B | 1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM NA-SALT | X-RAY DIFFRACTION | 1.3 | 20 | A-form double helix,double helix,structure | ||
| 41 | 1Y8L|1|A+ 1Y8L|1|B | Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-[2-(trifluoro)ethyl] Thymidine (T*) | X-RAY DIFFRACTION | 1.5 | 20 | A-form double helix,double helix,structure | ||
| 42 | 1MLX|1|A+ 1MLX|1|B | Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex | X-RAY DIFFRACTION | 1.25 | 20 | A-form double helix,double helix,structure | ||
| 43 | 1I0G|1|A+ 1I0G|1|B | 1.45 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, MEDIUM NA-SALT | X-RAY DIFFRACTION | 1.45 | 20 | A-form double helix,double helix,structure | ||
| 44 | 1R3G|1|A+ 1R3G|1|B | 1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues | X-RAY DIFFRACTION | 1.16 | 20 | A-form double helix,double helix,structure | ||
| 45 | 3OZ5|1|A+ 3OZ5|1|B | S-Methyl Carbocyclic LNA | X-RAY DIFFRACTION | 1.36 | 20 | A-form double helix,double helix,structure | ||
| 46 | 1MA8|1|A+ 1MA8|1|B | A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine | X-RAY DIFFRACTION | 1.3 | 20 | A-form double helix,double helix,structure | ||
| 47 | 3EY2|1|A+ 3EY2|1|B | A Conformational Transition in the Structure of a 2'-Thiomethyl-Modified DNA Visualized at High Resolution | X-RAY DIFFRACTION | 1.04 | 20 | A-form double helix,double helix,structure | ||
| 48 | 1DPL|1|A+ 1DPL|1|B | A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE | X-RAY DIFFRACTION | 0.83 | 20 | A-form double helix,double helix,structure | ||
| 49 | 1KGK|1|A+ 1KGK|1|B | Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp | X-RAY DIFFRACTION | 1 | 20 | A-form double helix,double helix,structure | ||
| 50 | 1ZF6|1|A+ 1ZF6|1|B | TGG DUPLEX A-DNA | X-RAY DIFFRACTION | 1.5 | 20 | A-form double helix,double helix,structure | ||
| 51 | 441D|1|A | HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) | X-RAY DIFFRACTION | 1.5 | 10 | double helix,structure | ||
| 52 | 232D|1|A | THE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGGCATGCCT) | X-RAY DIFFRACTION | 1.3 | 10 | A-form double helix,double helix,structure | ||
| 53 | 1L6B|1|A+ 1L6B|1|B | CRYSTAL STRUCTURE ANALYSIS OF THE ALL DNA HOLLIDAY JUNCTION STRUCTURE OF CCGGTACM5CGG | X-RAY DIFFRACTION | 1.5 | 20 | Holliday junction,structure | ||
| 54 | 1NVY|1|A+ 1NVY|1|B | Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 | X-RAY DIFFRACTION | 1.5 | 20 | Holliday junction,structure | ||
| 55 | 2B2B|1|A+ 2B2B|1|B | Structural distortions in psoralen cross-linked DNA | X-RAY DIFFRACTION | 1.5 | 20 | Holliday junction,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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