#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13O1T|1|C+ 3O1T|1|B (rep)DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3')Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-ray diffraction1.482010-11-17
21PUY|1|A5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
31PUY|1|B5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3'1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-ray diffraction1.52003-10-14
41K3X|1|B+ 1K3X|1|C5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3'Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-ray diffraction1.252002-10-04
51K3W|1|B+ 1K3W|1|C5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3'Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-ray diffraction1.422002-10-04
61LLM|1|A+ 1LLM|1|B5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3'Crystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-ray diffraction1.52003-09-30

Release history

Release0.10.2
Date2011-02-052011-02-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation
13O1T|1|C+ 3O1T|1|BIron-Catalyzed Oxidation Intermediates Captured in A DNA Repair DioxygenaseX-RAY DIFFRACTION1.4813enzyme,oxidoreductase
21LLM|1|A+ 1LLM|1|BCrystal Structure of a Zif23-GCN4 Chimera Bound to DNAX-RAY DIFFRACTION1.513B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
31K3X|1|B+ 1K3X|1|CCrystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNAX-RAY DIFFRACTION1.2513B-form double helix,double helix,structureenzyme,hydrolase,nuclease
41K3W|1|B+ 1K3W|1|CCrystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNAX-RAY DIFFRACTION1.4213B-form double helix,double helix,structureenzyme,hydrolase,nuclease
51PUY|1|B1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure
61PUY|1|A1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linkerX-RAY DIFFRACTION1.513B-form double helix,double helix,structure

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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