Equivalence class DNA_1.5_86977.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
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1 | 3O1T|1|C+ 3O1T|1|B (rep) | DNA (5'-D(*AP*AP*CP*GP*GP*TP*AP*TP*TP*AP*CP*CP*T)-3'), DNA (5'-D(*AP*GP*GP*TP*AP*AP*(MDU)P*AP*CP*CP*GP*T)-3') | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-ray diffraction | 1.48 | 2010-11-17 | ||||
2 | 1PUY|1|A | 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-ray diffraction | 1.5 | 2003-10-14 | ||||
3 | 1PUY|1|B | 5'-D(*GP*TP*TP*TP*TP*GP*(S02)P*CP*AP*AP*AP*AP*C)-3' | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-ray diffraction | 1.5 | 2003-10-14 | ||||
4 | 1K3X|1|B+ 1K3X|1|C | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3' | Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA | X-ray diffraction | 1.25 | 2002-10-04 | ||||
5 | 1K3W|1|B+ 1K3W|1|C | 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3' | Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA | X-ray diffraction | 1.42 | 2002-10-04 | ||||
6 | 1LLM|1|A+ 1LLM|1|B | 5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3' | Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA | X-ray diffraction | 1.5 | 2003-09-30 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
---|---|---|---|---|---|---|---|---|
1 | 3O1T|1|C+ 3O1T|1|B | Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase | X-RAY DIFFRACTION | 1.48 | 13 | enzyme,oxidoreductase | ||
2 | 1LLM|1|A+ 1LLM|1|B | Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA | X-RAY DIFFRACTION | 1.5 | 13 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
3 | 1K3X|1|B+ 1K3X|1|C | Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA | X-RAY DIFFRACTION | 1.25 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
4 | 1K3W|1|B+ 1K3W|1|C | Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA | X-RAY DIFFRACTION | 1.42 | 13 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
5 | 1PUY|1|B | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-RAY DIFFRACTION | 1.5 | 13 | B-form double helix,double helix,structure | ||
6 | 1PUY|1|A | 1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker | X-RAY DIFFRACTION | 1.5 | 13 | B-form double helix,double helix,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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