Equivalence class DNA_1.5_96364.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3FL6|1|A+ 3FL6|1|B (rep) | 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 14 | 2009-12-29 | ||||
| 2 | 3FL6|1|C+ 3FL6|1|D | 5'-D(*CP*GP*CP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3' | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-ray diffraction | 1.17 | 14 | 2009-12-29 | ||||
| 3 | 3EYI|1|C+ 3EYI|1|D | 5'-TCGCGCG-3' | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-ray diffraction | 1.45 | 13 | 2009-01-13 | ||||
| 4 | 1MF5|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT Quadruplex | X-ray diffraction | 1.1 | 7 | 2003-02-11 | ||||
| 5 | 1MF5|1|B | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT Quadruplex | X-ray diffraction | 1.1 | 7 | 2003-02-11 | ||||
| 6 | 1QYL|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Vanadium | X-ray diffraction | 1 | 7 | 2003-10-21 | ||||
| 7 | 1QYK|1|A | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Barium | X-ray diffraction | 1.4 | 7 | 2003-10-21 | ||||
| 8 | 1QYK|1|B | 5'-D(*GP*CP*AP*TP*GP*CP*T)-3' | GCATGCT + Barium | X-ray diffraction | 1.4 | 7 | 2003-10-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1QYK|1|B | GCATGCT + Barium | X-RAY DIFFRACTION | 1.4 | 7 | quadruplex,structure | ||
| 2 | 1MF5|1|A | GCATGCT Quadruplex | X-RAY DIFFRACTION | 1.1 | 7 | quadruplex,structure | ||
| 3 | 1QYL|1|A | GCATGCT + Vanadium | X-RAY DIFFRACTION | 1 | 7 | quadruplex,structure | ||
| 4 | 1QYK|1|A | GCATGCT + Barium | X-RAY DIFFRACTION | 1.4 | 7 | quadruplex,structure | ||
| 5 | 1MF5|1|B | GCATGCT Quadruplex | X-RAY DIFFRACTION | 1.1 | 7 | quadruplex,structure | ||
| 6 | 3FL6|1|A+ 3FL6|1|B | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 14 | B-form double helix,double helix,structure | ||
| 7 | 3EYI|1|C+ 3EYI|1|D | The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA | X-RAY DIFFRACTION | 1.45 | 13 | Z-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 8 | 3FL6|1|C+ 3FL6|1|D | Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(GCGTGCG)/d(CGCACGC) | X-RAY DIFFRACTION | 1.17 | 14 | B-form double helix,double helix,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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