#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13BSE|1|A+ 3BSE|1|B (rep)DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3')Crystal structure analysis of a 16-base-pair B-DNAX-ray diffraction1.6342008-12-23
23NCI|1|T+ 3NCI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-ray diffraction1.79312011-02-02
32W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3'Escherichia coliCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-ray diffraction1.85722009-02-17
41JX4|1|T+ 1JX4|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*TP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-ray diffraction1.7302001-10-05
53NGI|1|T+ 3NGI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction1.886312011-01-26
61S9F|1|I+ 1S9F|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
71S9F|1|J+ 1S9F|1|F5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
81S9F|1|K+ 1S9F|1|G5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
91S9F|1|L+ 1S9F|1|H5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
102OG0|1|C+ 2OG0|1|D5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3'Crystal Structure of the Lambda Xis-DNA complexX-ray diffraction1.9362007-03-13
113NDK|1|T+ 3NDK|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction2312011-01-26
122JEJ|1|T+ 2JEJ|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*CP*G)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction1.86332007-03-13
133DVO|1|E+ 3DVO|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.892362008-08-19
143DVO|1|G+ 3DVO|1|HDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.892362008-08-19
153M9N|1|T+ 3M9N|1|PDNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')synthetic constructCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction1.93282010-06-16
162BQ3|1|T+ 2BQ3|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2312005-06-22
173OSN|1|B+ 3OSN|1|C5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-ray diffraction1.9152010-10-20
182NLL|1|C+ 2NLL|1|DDNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3')RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-ray diffraction1.9361997-03-12
193G6P|1|C+ 3G6P|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex, 18bpX-ray diffraction1.985362009-04-21
201NLW|1|F+ 1NLW|1|G5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction2362003-02-04
211NLW|1|H+ 1NLW|1|J5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction2362003-02-04

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
13NCI|1|T+ 3NCI|1|PRB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-RAY DIFFRACTION1.7931B-form double helix,double helix,structureenzyme,polymerase,transferase
23NDK|1|T+ 3NDK|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION231B-form double helix,double helix,structureenzyme,polymerase,transferase
33NGI|1|T+ 3NGI|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION1.88631B-form double helix,double helix,structureenzyme,polymerase,transferase
42BQ3|1|T+ 2BQ3|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION231B-form double helix,double helix,structureenzyme,polymerase,transferase
53M9N|1|T+ 3M9N|1|PCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION1.9328B-form double helix,double helix,structureenzyme,polymerase,transferase
62JEJ|1|T+ 2JEJ|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION1.8633enzyme,polymerase,transferase
73OSN|1|B+ 3OSN|1|CStructural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION1.915enzyme,polymerase,transferase
83DVO|1|E+ 3DVO|1|FSgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
93DVO|1|G+ 3DVO|1|HSgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
102NLL|1|C+ 2NLL|1|DRETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-RAY DIFFRACTION1.936B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
113G6P|1|C+ 3G6P|1|DGR DNA binding domain:FKBP5 complex, 18bpX-RAY DIFFRACTION1.98536B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
122OG0|1|C+ 2OG0|1|DCrystal Structure of the Lambda Xis-DNA complexX-RAY DIFFRACTION1.936B-form double helix,double helix,structureenzyme,recombinase
132W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|HCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-RAY DIFFRACTION1.8572B-form double helix,double helix,structureregulatory,transcription
141NLW|1|H+ 1NLW|1|JCrystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION236B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
151NLW|1|F+ 1NLW|1|GCrystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION236B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
163BSE|1|A+ 3BSE|1|BCrystal structure analysis of a 16-base-pair B-DNAX-RAY DIFFRACTION1.634B-form double helix,double helix,structure
171S9F|1|K+ 1S9F|1|GDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
181S9F|1|J+ 1S9F|1|FDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
191JX4|1|T+ 1JX4|1|PCrystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-RAY DIFFRACTION1.730B-form double helix,double helix,structureenzyme,polymerase,transferase
201S9F|1|I+ 1S9F|1|EDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
211S9F|1|L+ 1S9F|1|HDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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