Equivalence class DNA_2.0_31290.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 476D|1|A+ 476D|1|B (rep) | 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-ray diffraction | 1.3 | 22 | 1999-07-19 | ||||
| 2 | 3NDH|1|C+ 3NDH|1|D | DNA (5'-D(*C*CP*AP*TP*CP*GP*CP*GP*TP*AP*C)-3'), DNA (5'-D(*G*GP*TP*AP*CP*GP*CP*GP*AP*TP*G)-3') | Restriction endonuclease in complex with substrate DNA | X-ray diffraction | 1.3 | 20 | 2010-07-28 | ||||
| 3 | 2OAA|1|C+ 2OAA|1|D | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 21 | 2007-02-20 | ||||
| 4 | 2OAA|1|E+ 2OAA|1|F | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 22 | 2007-02-20 | ||||
| 5 | 2ODI|1|C+ 2ODI|1|D | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 22 | 2007-03-20 | ||||
| 6 | 2ODI|1|E+ 2ODI|1|F | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 22 | 2007-03-20 | ||||
| 7 | 3BM3|1|C+ 3BM3|1|D | DNA (5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3') | Restriction endonuclease PspGI-substrate DNA complex | X-ray diffraction | 1.7 | 22 | 2008-09-16 | ||||
| 8 | 3GOX|1|C+ 3GOX|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-ray diffraction | 1.5 | 20 | 2009-04-28 | ||||
| 9 | 3MR3|1|T+ 3MR3|1|P | DNA (5'-D(*CP*AP*(TTD)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*TP*CP*AP*T)-3') | Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) | X-ray diffraction | 1.75 | 20 | 2010-06-30 | ||||
| 10 | 2AVH|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3' | G4T3G4 dimeric quadruplex structure | X-ray diffraction | 1.5 | 11 | 2006-03-28 | ||||
| 11 | 1NR8|1|B | H-((GPN)*(TPN)*(APN)*(GPN)*(A66)*(T66)*(C66)*(APN)*(CPN)*(TPN))-NH2 | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-ray diffraction | 1.66 | 0 | 2003-10-28 | ||||
| 12 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | 5'-D(*AP*TP*AP*TP*CP*T)-3', 5'-D(*AP*TP*CP*TP*GP*AP*AP*GP*TP*AP*T)-3', 5'-D(P*(3DR)P*AP*GP*AP*T)-3' | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-ray diffraction | 1.45 | 22 | 2007-11-13 | ||||
| 13 | 2Q10|1|C+ 2Q10|1|D | DNA (5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3'), DNA (5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3') | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-ray diffraction | 1.75 | 22 | 2007-06-05 | ||||
| 14 | 2Q10|1|E+ 2Q10|1|F | DNA (5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3'), DNA (5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3') | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-ray diffraction | 1.75 | 22 | 2007-06-05 | ||||
| 15 | 3FC3|1|C+ 3FC3|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I | X-ray diffraction | 1.75 | 18 | 2009-03-31 | ||||
| 16 | 1TEZ|1|I+ 1TEZ|1|J | 5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3', 5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3' | synthetic construct | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 20 | 2004-12-14 | |||
| 17 | 1TEZ|1|K+ 1TEZ|1|L | 5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3', 5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3' | synthetic construct | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 20 | 2004-12-14 | |||
| 18 | 2PFN|1|T+ 2PFN|1|P+ 2PFN|1|D | Downstream Primer, Primer, Template | Na in the active site of DNA Polymerase lambda | X-ray diffraction | 1.9 | 21 | 2007-05-15 | ||||
| 19 | 3PNC|1|C+ 3PNC|1|B+ 3PNC|1|D | 5'-D(*CP*AP*GP*TP*AP*G)-3', 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3', 5'-D(*GP*CP*CP*G)-3' | Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site | X-ray diffraction | 2 | 21 | 2011-02-02 | ||||
| 20 | 1ORN|1|B+ 1ORN|1|C | 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3' | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex | X-ray diffraction | 1.7 | 20 | 2003-07-15 | ||||
| 21 | 2PFO|1|T+ 2PFO|1|P+ 2PFO|1|D | Downstream Primer, Primer, Template | DNA Polymerase lambda in complex with DNA and dUPNPP | X-ray diffraction | 2 | 21 | 2007-05-15 | ||||
| 22 | 2I0Q|1|D | 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins | X-ray diffraction | 1.91 | 11 | 2006-08-22 | ||||
| 23 | 1XSN|1|T+ 1XSN|1|P+ 1XSN|1|D | 5'-D(*CP*AP*GP*TP*AP*(2DT))-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP | X-ray diffraction | 1.95 | 21 | 2005-01-18 | ||||
| 24 | 1U1Q|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(OIP)*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTA(DI)GG); A Human Telomeric Repeat Containing Inosine | X-ray diffraction | 1.8 | 11 | 2004-09-21 | ||||
| 25 | 3MQY|1|D+ 3MQY|1|F+ 3MQY|1|C+ 3MQY|1|E | DNA (5'-D(*GP*AP*GP*TP*CP*CP*A)-3'), DNA (5'-D(P*CP*CP*GP*GP*TP*GP*GP*AP*CP*TP*C)-3') | SgrAI with cleaved DNA and Magnesium bound | X-ray diffraction | 2 | 36 | 2010-11-24 | ||||
| 26 | 1U1R|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*(2PR)P*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(2PR)G); A Human Telomeric Repeat Containing 2-aminopurine | X-ray diffraction | 1.8 | 11 | 2004-09-21 | ||||
| 27 | 3MDC|1|T+ 3MDC|1|P+ 3MDC|1|D | DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | DNA polymerase lambda in complex with dFdCTP | X-ray diffraction | 1.999 | 21 | 2010-04-28 | ||||
| 28 | 1U1K|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*(7DA)P*GP*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTT 7DA GGG); A Human Telomeric Repeat Containing 7-deaza-adenine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 29 | 1U1O|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*(OIP)*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(DI)G); A Human Telomeric Repeat Containing Inosine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 30 | 1U1M|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(7GU)P*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTA 7GU GG); A Human Telomeric Repeat Containing 7-deaza-guanine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 31 | 1U1L|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*(PRN)P*GP*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTT PRN GGG); A Human Telomeric Repeat Containing nebularine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 32 | 1AAY|1|B+ 1AAY|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZIF268 ZINC FINGER-DNA COMPLEX | X-ray diffraction | 1.6 | 22 | 1997-04-21 | ||||
| 33 | 1A1H|1|B+ 1A1H|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 1.6 | 22 | 1998-06-10 | ||||
| 34 | 1A1I|1|B+ 1A1I|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 1.6 | 22 | 1998-06-17 | ||||
| 35 | 1EON|1|C+ 1EON|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3'), DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ | X-ray diffraction | 1.6 | 22 | 2000-04-04 | ||||
| 36 | 1JK2|1|B+ 1JK2|1|C | 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*CP*CP*CP*AP*CP*GP*C)-3' | Zif268 D20A mutant bound to the GCT DNA site | X-ray diffraction | 1.65 | 22 | 2001-10-19 | ||||
| 37 | 1SUZ|1|C+ 1SUZ|1|D | 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | The structure of K92A EcoRV bound to cognate DNA and Mg2+ | X-ray diffraction | 1.8 | 20 | 2004-04-06 | ||||
| 38 | 1E3O|1|A+ 1E3O|1|B | 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*A)-3', 5'-D(*TP*CP*CP*TP*CP*AP*TP*GP*CP*AP*T)-3' | Homo sapiens | Crystal structure of Oct-1 POU dimer bound to MORE | X-ray diffraction | 1.9 | 22 | 2001-11-10 | |||
| 39 | 1A1K|1|B+ 1A1K|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-ray diffraction | 1.9 | 22 | 1998-06-10 | ||||
| 40 | 1A1G|1|B+ 1A1G|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-ray diffraction | 1.9 | 22 | 1998-06-10 | ||||
| 41 | 1SSP|1|B+ 1SSP|1|A | 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3' | WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA | X-ray diffraction | 1.9 | 21 | 1999-05-06 | ||||
| 42 | 1JK1|1|B+ 1JK1|1|C | 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*G)-3', 5'-D(*TP*CP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3' | Zif268 D20A Mutant Bound to WT DNA Site | X-ray diffraction | 1.9 | 22 | 2001-10-19 | ||||
| 43 | 2B0E|1|C+ 2B0E|1|D | 5'-D(*AP*AP*AP*GP*AP*AP*(DU)P*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease/GAAUTC/Ca2+ | X-ray diffraction | 1.9 | 22 | 2005-09-27 | ||||
| 44 | 1B94|1|C+ 1B94|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM | X-ray diffraction | 1.9 | 22 | 1999-02-26 | ||||
| 45 | 1EO4|1|C+ 1EO4|1|D | DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE | X-ray diffraction | 1.9 | 20 | 2000-04-04 | ||||
| 46 | 1B97|1|C+ 1B97|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 1.9 | 22 | 1999-02-26 | ||||
| 47 | 1A1J|1|B+ 1A1J|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-ray diffraction | 2 | 22 | 1998-06-17 | ||||
| 48 | 1RVA|1|C+ 1RVA|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-ray diffraction | 2 | 22 | 1995-01-26 | ||||
| 49 | 2B0D|1|C+ 2B0D|1|D | 5'-D(*AP*AP*AP*GP*AP*AP*TP*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease/GAATTC/Ca2+ | X-ray diffraction | 2 | 22 | 2005-09-27 | ||||
| 50 | 1EO3|1|C+ 1EO3|1|D | DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY | X-ray diffraction | 2 | 21 | 2000-04-04 | ||||
| 51 | 1AZ0|1|C+ 1AZ0|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ECORV ENDONUCLEASE/DNA COMPLEX | X-ray diffraction | 2 | 22 | 1998-06-19 | ||||
| 52 | 1BGB|1|C+ 1BGB|1|D | DNA (5'-D(*CP*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3') | ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA | X-ray diffraction | 2 | 21 | 1998-10-28 | ||||
| 53 | 1BSU|1|D+ 1BSU|1|C | DNA (5'-D(*AP*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3'), DNA (5'-D(P*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3') | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-ray diffraction | 2 | 21 | 1998-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1NR8|1|B | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-RAY DIFFRACTION | 1.66 | 0 | NAKB_NA_annotation | NAKB_protein_annotation | |
| 2 | 2AVH|1|A | G4T3G4 dimeric quadruplex structure | X-RAY DIFFRACTION | 1.5 | 11 | quadruplex,structure | ||
| 3 | 2I0Q|1|D | Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins | X-RAY DIFFRACTION | 1.91 | 11 | chromatin,structural,telomere | ||
| 4 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 5 | 3BM3|1|C+ 3BM3|1|D | Restriction endonuclease PspGI-substrate DNA complex | X-RAY DIFFRACTION | 1.7 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 6 | 1BGB|1|C+ 1BGB|1|D | ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 7 | 1EO4|1|C+ 1EO4|1|D | ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE | X-RAY DIFFRACTION | 1.9 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 8 | 1SUZ|1|C+ 1SUZ|1|D | The structure of K92A EcoRV bound to cognate DNA and Mg2+ | X-RAY DIFFRACTION | 1.8 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 9 | 1B94|1|C+ 1B94|1|D | RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 10 | 1B97|1|C+ 1B97|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 11 | 1EON|1|C+ 1EON|1|D | ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ | X-RAY DIFFRACTION | 1.6 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 12 | 1EO3|1|C+ 1EO3|1|D | INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 13 | 2B0D|1|C+ 2B0D|1|D | EcoRV Restriction Endonuclease/GAATTC/Ca2+ | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 14 | 2B0E|1|C+ 2B0E|1|D | EcoRV Restriction Endonuclease/GAAUTC/Ca2+ | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 15 | 1BSU|1|D+ 1BSU|1|C | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 16 | 1RVA|1|C+ 1RVA|1|D | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 17 | 1AZ0|1|C+ 1AZ0|1|D | ECORV ENDONUCLEASE/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 18 | 2OAA|1|C+ 2OAA|1|D | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 21 | double helix,structure | enzyme,hydrolase,nuclease | |
| 19 | 2OAA|1|E+ 2OAA|1|F | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 22 | double helix,structure | enzyme,hydrolase,nuclease | |
| 20 | 476D|1|A+ 476D|1|B | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-RAY DIFFRACTION | 1.3 | 22 | B-form double helix,double helix,structure | ||
| 21 | 3GOX|1|C+ 3GOX|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-RAY DIFFRACTION | 1.5 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 22 | 3FC3|1|C+ 3FC3|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I | X-RAY DIFFRACTION | 1.75 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 23 | 1E3O|1|A+ 1E3O|1|B | Crystal structure of Oct-1 POU dimer bound to MORE | X-RAY DIFFRACTION | 1.9 | 22 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | ||
| 24 | 3MQY|1|D+ 3MQY|1|F+ 3MQY|1|C+ 3MQY|1|E | SgrAI with cleaved DNA and Magnesium bound | X-RAY DIFFRACTION | 2 | 36 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 25 | 1A1K|1|B+ 1A1K|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 26 | 1A1J|1|B+ 1A1J|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 27 | 1A1I|1|B+ 1A1I|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 1.6 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 28 | 1A1G|1|B+ 1A1G|1|C | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 29 | 1JK2|1|B+ 1JK2|1|C | Zif268 D20A mutant bound to the GCT DNA site | X-RAY DIFFRACTION | 1.65 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 30 | 1A1H|1|B+ 1A1H|1|C | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 1.6 | 22 | double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 31 | 1JK1|1|B+ 1JK1|1|C | Zif268 D20A Mutant Bound to WT DNA Site | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 32 | 1AAY|1|B+ 1AAY|1|C | ZIF268 ZINC FINGER-DNA COMPLEX | X-RAY DIFFRACTION | 1.6 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 33 | 1SSP|1|B+ 1SSP|1|A | WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA | X-RAY DIFFRACTION | 1.9 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 34 | 1ORN|1|B+ 1ORN|1|C | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex | X-RAY DIFFRACTION | 1.7 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 35 | 1TEZ|1|K+ 1TEZ|1|L | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 20 | enzyme,lyase | ||
| 36 | 1TEZ|1|I+ 1TEZ|1|J | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 20 | enzyme,lyase | ||
| 37 | 3PNC|1|C+ 3PNC|1|B+ 3PNC|1|D | Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site | X-RAY DIFFRACTION | 2 | 21 | enzyme,polymerase,transferase | ||
| 38 | 3MDC|1|T+ 3MDC|1|P+ 3MDC|1|D | DNA polymerase lambda in complex with dFdCTP | X-RAY DIFFRACTION | 1.999 | 21 | enzyme,polymerase,transferase | ||
| 39 | 2PFN|1|T+ 2PFN|1|P+ 2PFN|1|D | Na in the active site of DNA Polymerase lambda | X-RAY DIFFRACTION | 1.9 | 21 | enzyme,polymerase,transferase | ||
| 40 | 1XSN|1|T+ 1XSN|1|P+ 1XSN|1|D | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP | X-RAY DIFFRACTION | 1.95 | 21 | enzyme,polymerase,transferase | ||
| 41 | 2PFO|1|T+ 2PFO|1|P+ 2PFO|1|D | DNA Polymerase lambda in complex with DNA and dUPNPP | X-RAY DIFFRACTION | 2 | 21 | enzyme,polymerase,transferase | ||
| 42 | 3MR3|1|T+ 3MR3|1|P | Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) | X-RAY DIFFRACTION | 1.75 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 43 | 3NDH|1|C+ 3NDH|1|D | Restriction endonuclease in complex with substrate DNA | X-RAY DIFFRACTION | 1.3 | 20 | double helix,structure | enzyme,hydrolase,nuclease | |
| 44 | 2Q10|1|E+ 2Q10|1|F | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-RAY DIFFRACTION | 1.75 | 22 | enzyme,hydrolase,nuclease | ||
| 45 | 2ODI|1|E+ 2ODI|1|F | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 46 | 2ODI|1|C+ 2ODI|1|D | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 47 | 2Q10|1|C+ 2Q10|1|D | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-RAY DIFFRACTION | 1.75 | 22 | enzyme,hydrolase,nuclease | ||
| 48 | 1U1K|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTT 7DA GGG); A Human Telomeric Repeat Containing 7-deaza-adenine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 49 | 1U1R|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(2PR)G); A Human Telomeric Repeat Containing 2-aminopurine | X-RAY DIFFRACTION | 1.8 | 11 | ribonucleoprotein,structural | ||
| 50 | 1U1L|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTT PRN GGG); A Human Telomeric Repeat Containing nebularine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 51 | 1U1O|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(DI)G); A Human Telomeric Repeat Containing Inosine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 52 | 1U1Q|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTA(DI)GG); A Human Telomeric Repeat Containing Inosine | X-RAY DIFFRACTION | 1.8 | 11 | ribonucleoprotein,structural | ||
| 53 | 1U1M|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTA 7GU GG); A Human Telomeric Repeat Containing 7-deaza-guanine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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