Equivalence class DNA_2.0_65376.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3NZ7|1|B (rep) | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-ray diffraction | 1.1 | 12 | 2010-08-25 | ||||
| 2 | 3NYP|1|B | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-ray diffraction | 1.179 | 12 | 2010-08-25 | ||||
| 3 | 1L1H|1|B | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal Structure of the Quadruplex DNA-Drug Complex | X-ray diffraction | 1.75 | 12 | 2003-02-11 | ||||
| 4 | 2HBN|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-ray diffraction | 1.55 | 12 | 2006-09-19 | ||||
| 5 | 2HBN|1|B | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-ray diffraction | 1.55 | 12 | 2006-09-19 | ||||
| 6 | 2HBN|1|C | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-ray diffraction | 1.55 | 12 | 2006-09-19 | ||||
| 7 | 2HBN|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-ray diffraction | 1.55 | 12 | 2006-09-19 | ||||
| 8 | 1JB7|1|G | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-ray diffraction | 1.86 | 12 | 2001-06-11 | ||||
| 9 | 1JB7|1|H | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-ray diffraction | 1.86 | 12 | 2001-06-11 | ||||
| 10 | 3ERU|1|B | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045 | X-ray diffraction | 2 | 12 | 2008-10-14 | ||||
| 11 | 3EUM|1|B | 5'-D(*DGP*DGP*DGP*DGP*DTP*DTP*DTP*DTP*DGP*DGP*DGP*DG)-3' | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6066 | X-ray diffraction | 1.78 | 12 | 2008-10-21 | ||||
| 12 | 1JRN|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-ray diffraction | 2 | 12 | 2002-06-28 | ||||
| 13 | 1JRN|1|B | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-ray diffraction | 2 | 12 | 2002-06-28 | ||||
| 14 | 1JRN|1|C | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-ray diffraction | 2 | 12 | 2002-06-28 | ||||
| 15 | 1JRN|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-ray diffraction | 2 | 12 | 2002-06-28 | ||||
| 16 | 2GWQ|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 17 | 2GWQ|1|B | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 18 | 2GWQ|1|C | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 19 | 2GWQ|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 20 | 2GWQ|1|E | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 21 | 2GWQ|1|F | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 22 | 2GWQ|1|G | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 23 | 2GWQ|1|H | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-ray diffraction | 2 | 12 | 2007-06-19 | ||||
| 24 | 1JPQ|1|A | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*TP*GP*GP*GP*G)-3' | Crystal Structure of the Oxytricha Telomeric DNA at 1.6A | X-ray diffraction | 1.6 | 12 | 2002-06-28 | ||||
| 25 | 1JPQ|1|B | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*TP*GP*GP*GP*G)-3' | Crystal Structure of the Oxytricha Telomeric DNA at 1.6A | X-ray diffraction | 1.6 | 12 | 2002-06-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 3NYP|1|B | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-RAY DIFFRACTION | 1.179 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 2 | 3EUM|1|B | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6066 | X-RAY DIFFRACTION | 1.78 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 3 | 1L1H|1|B | Crystal Structure of the Quadruplex DNA-Drug Complex | X-RAY DIFFRACTION | 1.75 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 4 | 3NZ7|1|B | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains | X-RAY DIFFRACTION | 1.1 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 5 | 3ERU|1|B | A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045 | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 6 | 2GWQ|1|E | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 7 | 2GWQ|1|C | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 8 | 1JPQ|1|B | Crystal Structure of the Oxytricha Telomeric DNA at 1.6A | X-RAY DIFFRACTION | 1.6 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 9 | 2HBN|1|D | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-RAY DIFFRACTION | 1.55 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 10 | 2HBN|1|C | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-RAY DIFFRACTION | 1.55 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 11 | 2HBN|1|A | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-RAY DIFFRACTION | 1.55 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 12 | 1JRN|1|A | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 13 | 1JRN|1|C | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 14 | 2GWQ|1|B | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 15 | 2GWQ|1|H | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 16 | 2GWQ|1|D | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 17 | 2GWQ|1|F | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 18 | 2GWQ|1|G | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 19 | 2GWQ|1|A | Crystal structure of D(G4T4G4) with four quadruplexes in the asymmetric unit. | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 20 | 1JPQ|1|A | Crystal Structure of the Oxytricha Telomeric DNA at 1.6A | X-RAY DIFFRACTION | 1.6 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 21 | 1JRN|1|D | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 22 | 1JRN|1|B | Orthorhombic form of Oxytricha telomeric DNA at 2.0A | X-RAY DIFFRACTION | 2 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 23 | 2HBN|1|B | Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex | X-RAY DIFFRACTION | 1.55 | 12 | function,quadruplex,structure,telomeric DNA | ||
| 24 | 1JB7|1|H | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-RAY DIFFRACTION | 1.86 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere | |
| 25 | 1JB7|1|G | DNA G-Quartets in a 1.86 A Resolution Structure of an Oxytricha nova Telomeric Protein-DNA Complex | X-RAY DIFFRACTION | 1.86 | 12 | function,quadruplex,structure,telomeric DNA | chromatin,structural,telomere |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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