Equivalence class DNA_2.0_69756.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2ASD|1|E+ 2ASD|1|D (rep) | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Insertion Ternary Complex | X-ray diffraction | 1.95 | 30 | 2006-01-10 | ||||
| 2 | 2ASD|1|J+ 2ASD|1|H | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Insertion Ternary Complex | X-ray diffraction | 1.95 | 32 | 2006-01-10 | ||||
| 3 | 1NKP|1|F+ 1NKP|1|G | 5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Myc-Max recognizing DNA | X-ray diffraction | 1.8 | 38 | 2003-02-04 | ||||
| 4 | 1LAT|1|C+ 1LAT|1|D | DNA (5'-D(*TP*TP*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*TP*TP*CP*TP*G P*GP*A)-3') | GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX | X-ray diffraction | 1.9 | 38 | 1996-04-03 | ||||
| 5 | 1TRO|1|I+ 1TRO|1|J | DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3') | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-ray diffraction | 1.9 | 38 | 1994-01-31 | ||||
| 6 | 1TRO|1|K+ 1TRO|1|L | DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3') | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-ray diffraction | 1.9 | 38 | 1994-01-31 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1NKP|1|F+ 1NKP|1|G | Crystal structure of Myc-Max recognizing DNA | X-RAY DIFFRACTION | 1.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 2 | 1LAT|1|C+ 1LAT|1|D | GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 3 | 1TRO|1|I+ 1TRO|1|J | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 4 | 1TRO|1|K+ 1TRO|1|L | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 5 | 2ASD|1|E+ 2ASD|1|D | oxoG-modified Insertion Ternary Complex | X-RAY DIFFRACTION | 1.95 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 6 | 2ASD|1|J+ 2ASD|1|H | oxoG-modified Insertion Ternary Complex | X-RAY DIFFRACTION | 1.95 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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