Equivalence class DNA_2.0_73490.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3JXC|1|A+ 3JXC|1|B (rep) | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-ray diffraction | 1.9 | 40 | 2010-01-19 | ||||
| 2 | 1MUS|1|B+ 1MUS|1|C | DNA non-transferred strand, DNA transferred strand | crystal structure of Tn5 transposase complexed with resolved outside end DNA | X-ray diffraction | 1.9 | 40 | 2002-09-27 | ||||
| 3 | 2R1J|1|A+ 2R1J|1|B | 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3' | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-ray diffraction | 1.53 | 40 | 2008-04-29 | ||||
| 4 | 3JXB|1|A+ 3JXB|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-ray diffraction | 1.67 | 40 | 2010-01-19 | ||||
| 5 | 2HAN|1|C+ 2HAN|1|D | 5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3' | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-ray diffraction | 1.95 | 40 | 2007-05-22 | ||||
| 6 | 1PUF|1|D+ 1PUF|1|E | 5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-ray diffraction | 1.9 | 40 | 2003-09-02 | ||||
| 7 | 2C62|1|C | 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3' | Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA | X-ray diffraction | 1.74 | 16 | 2006-01-11 | ||||
| 8 | 1L3L|1|F+ 1L3L|1|H | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 40 | 2002-07-03 | ||||
| 9 | 1LMB|1|1+ 1LMB|1|2 | DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-ray diffraction | 1.8 | 40 | 1991-11-05 | ||||
| 10 | 1L3L|1|E+ 1L3L|1|G | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 40 | 2002-07-03 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1PUF|1|D+ 1PUF|1|E | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-RAY DIFFRACTION | 1.9 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 2 | 2R1J|1|A+ 2R1J|1|B | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-RAY DIFFRACTION | 1.53 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 3 | 3JXC|1|A+ 3JXC|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-RAY DIFFRACTION | 1.9 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 4 | 3JXB|1|A+ 3JXB|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-RAY DIFFRACTION | 1.67 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 5 | 1L3L|1|F+ 1L3L|1|H | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 6 | 1L3L|1|E+ 1L3L|1|G | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 7 | 1LMB|1|1+ 1LMB|1|2 | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-RAY DIFFRACTION | 1.8 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 8 | 2HAN|1|C+ 2HAN|1|D | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-RAY DIFFRACTION | 1.95 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 9 | 1MUS|1|B+ 1MUS|1|C | crystal structure of Tn5 transposase complexed with resolved outside end DNA | X-RAY DIFFRACTION | 1.9 | 40 | enzyme,hydrolase,nuclease,recombinase | ||
| 10 | 2C62|1|C | Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA | X-RAY DIFFRACTION | 1.74 | 16 | regulatory,transcription |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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