Equivalence class DNA_2.0_95960.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2FMP|1|T+ 2FMP|1|P+ 2FMP|1|D (rep) | 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site | X-ray diffraction | 1.65 | 31 | 2006-04-25 | ||||
| 2 | 2VE9|1|I+ 2VE9|1|J | 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3' | Pseudomonas aeruginosa | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-ray diffraction | 1.9 | 30 | 2008-09-09 | |||
| 3 | 2VE9|1|K+ 2VE9|1|L | 5'-D(*AP*CP*CP*AP*GP*GP*GP*CP*AP*GP *GP*GP*CP*GP*AP*C)-3', 5'-D(*GP*TP*CP*GP*CP*CP*CP*TP*GP*CP *CP*CP*TP*GP*GP*T)-3' | Pseudomonas aeruginosa | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-ray diffraction | 1.9 | 30 | 2008-09-09 | |||
| 4 | 3OHB|1|T+ 3OHB|1|P | 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*TP*GP*(8OG)P*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3' | Yeast DNA polymerase eta extending from an 8-oxoG lesion | X-ray diffraction | 2 | 24 | 2010-12-22 | ||||
| 5 | 1L3S|1|C+ 1L3S|1|B | 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*G)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. | X-ray diffraction | 1.7 | 23 | 2003-03-25 | ||||
| 6 | 3BS1|1|B+ 3BS1|1|C | DNA (5'-D(*DAP*DAP*(BRU)P*DAP*DCP*DTP*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DTP*DAP*DAP*DCP*DAP*DGP*DTP*DTP*DAP*DAP*DGP*(BRU)P*DAP*DT)-3') | Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding | X-ray diffraction | 1.6 | 32 | 2008-04-08 | ||||
| 7 | 2HHV|1|C+ 2HHV|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*TP*G)-3', 5'-D(*GP*TP*AP*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | T:O6-methyl-guanine in the polymerase-2 basepair position | X-ray diffraction | 1.55 | 27 | 2006-12-12 | ||||
| 8 | 1L3T|1|C+ 1L3T|1|B | 5'-D(*GP*AP*CP*G*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue | X-ray diffraction | 1.7 | 22 | 2003-03-25 | ||||
| 9 | 1L3V|1|C+ 1L3V|1|B | 5'-D(*GP*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*CP*GP*TP*C)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues. | X-ray diffraction | 1.71 | 31 | 2003-03-25 | ||||
| 10 | 2HHU|1|C+ 2HHU|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*CP*C)-3', 5'-D(*GP*TP*AP*CP*(6OG)P*GP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) | X-ray diffraction | 1.8 | 24 | 2006-12-12 | ||||
| 11 | 1NH2|1|E+ 1NH2|1|F | 5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3', 5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' | Crystal structure of a yeast TFIIA/TBP/DNA complex | X-ray diffraction | 1.9 | 32 | 2003-10-21 | ||||
| 12 | 1L3U|1|C+ 1L3U|1|B | 5'-D(*GP*AP*C*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue. | X-ray diffraction | 1.8 | 24 | 2003-03-25 | ||||
| 13 | 1NK4|1|C+ 1NK4|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 1.6 | 19 | 2004-03-30 | ||||
| 14 | 3M8R|1|C+ 3M8R|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP | X-ray diffraction | 2 | 28 | 2010-07-07 | ||||
| 15 | 3JPQ|1|T+ 3JPQ|1|P+ 3JPQ|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate | X-ray diffraction | 1.9 | 31 | 2010-06-02 | ||||
| 16 | 1L2D|1|B+ 1L2D|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex | X-ray diffraction | 2 | 23 | 2002-06-14 | ||||
| 17 | 1L1T|1|B+ 1L1T|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) Bound to Abasic-Site Containing DNA | X-ray diffraction | 1.8 | 23 | 2002-06-14 | ||||
| 18 | 3ISC|1|T+ 3ISC|1|P+ 3ISC|1|D | 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | synthetic construct | Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA | X-ray diffraction | 2 | 31 | 2009-09-15 | |||
| 19 | 1L5U|1|C+ 1L5U|1|B | 5'-D(*GP*A*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3', 5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*C)-3' | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue. | X-ray diffraction | 1.95 | 26 | 2003-03-25 | ||||
| 20 | 3IAY|1|T+ 3IAY|1|P | 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3' | Ternary complex of DNA polymerase delta | X-ray diffraction | 2 | 28 | 2009-09-22 | ||||
| 21 | 1L1Z|1|B+ 1L1Z|1|C | 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' | MutM (Fpg) Covalent-DNA Intermediate | X-ray diffraction | 1.7 | 23 | 2002-06-14 | ||||
| 22 | 3JPS|1|T+ 3JPS|1|P+ 3JPS|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate | X-ray diffraction | 2 | 31 | 2010-06-02 | ||||
| 23 | 1NKE|1|C+ 1NKE|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-ray diffraction | 1.8 | 23 | 2004-03-30 | ||||
| 24 | 2FMS|1|T+ 2FMS|1|P+ 2FMS|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site | X-ray diffraction | 2 | 31 | 2006-04-25 | ||||
| 25 | 3JPO|1|T+ 3JPO|1|P+ 3JPO|1|D | 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate | X-ray diffraction | 2 | 31 | 2010-06-02 | ||||
| 26 | 2F5N|1|B+ 2F5N|1|C | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3' | MutM crosslinked to undamaged DNA sampling A:T base pair IC1 | X-ray diffraction | 2 | 27 | 2006-03-07 | ||||
| 27 | 1NJY|1|C+ 1NJY|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2 | 24 | 2004-03-30 | ||||
| 28 | 1TV9|1|T+ 1TV9|1|P+ 1TV9|1|D | 5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | X-ray diffraction | 2 | 32 | 2004-11-23 | ||||
| 29 | 1NJZ|1|C+ 1NJZ|1|B | DNA PRIMER STRAND, DNA TEMPLATE STRAND | CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-ray diffraction | 2 | 21 | 2004-03-30 | ||||
| 30 | 3MBY|1|T+ 3MBY|1|P+ 3MBY|1|D | DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3') | Ternary complex of DNA Polymerase BETA with template base A and 8oxodGTP in the active site with a dideoxy terminated primer | X-ray diffraction | 2 | 31 | 2010-06-09 | ||||
| 31 | 2F5P|1|C+ 2F5P|1|D | 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*AP*GP*TP*CP*TP*AP*CP*C)-3' | synthetic construct | MutM crosslinked to undamaged DNA sampling A:T base pair IC2 | X-ray diffraction | 2 | 25 | 2006-03-07 | |||
| 32 | 2E42|1|C+ 2E42|1|D | DNA (5'-D(P*DAP*DAP*DTP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DCP*DT)-3'), DNA (5'-D(P*DTP*DAP*DGP*DGP*DAP*DTP*DTP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DAP*DT)-3') | Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment | X-ray diffraction | 1.8 | 32 | 2007-12-18 | ||||
| 33 | 3MFH|1|T+ 3MFH|1|P | 5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*TP*TP*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3' | DNA Polymerase Eta in Complex With Undamaged DNA | X-ray diffraction | 2 | 24 | 2010-06-23 | ||||
| 34 | 2HW3|1|C+ 2HW3|1|B | 5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*CP*TP*T)-3', 5'-D(*GP*TP*A*CP*(6OG)P*AP*GP*CP*TP*GP*AP*TP*CP*GP*CP*A)-3' | T:O6-methyl-guanine pair in the polymerase postinsertion site (-1 basepair position) | X-ray diffraction | 1.98 | 24 | 2006-12-12 | ||||
| 35 | 1N4L|1|B+ 1N4L|1|D | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*G)-3', 5'-D(*CP*TP*TP*TP*TP*TP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | A DNA analogue of the polypurine tract of HIV-1 | X-ray diffraction | 2 | 32 | 2003-06-24 | ||||
| 36 | 3ISB|1|T+ 3ISB|1|P+ 3ISB|1|D | 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3' | Binary complex of human DNA polymerase beta with a gapped DNA | X-ray diffraction | 2 | 31 | 2009-09-15 | ||||
| 37 | 1DFM|1|C+ 1DFM|1|D | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-ray diffraction | 1.5 | 32 | 2000-02-21 | ||||
| 38 | 1DP7|1|D | DNA (5'-D(*CP*GP*(BRU)P*TP*AP*CP*CP*AP*(BRU)P*GP*GP*TP*AP*AP*CP*G)-3') | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-ray diffraction | 1.5 | 16 | 2000-03-06 | ||||
| 39 | 3G9M|1|C+ 3G9M|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:Sgk 16bp complex-44 | X-ray diffraction | 1.61 | 32 | 2009-04-21 | ||||
| 40 | 3GPU|1|B+ 3GPU|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | X-ray diffraction | 1.62 | 25 | 2009-11-10 | ||||
| 41 | 3FYL|1|C+ 3FYL|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:CGT complex | X-ray diffraction | 1.63 | 32 | 2009-04-21 | ||||
| 42 | 3G9O|1|C+ 3G9O|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:Sgk 16bp complex-9 | X-ray diffraction | 1.65 | 32 | 2009-04-21 | ||||
| 43 | 3G9P|1|C+ 3G9P|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:Sgk 16bp complex-7 | X-ray diffraction | 1.652 | 32 | 2009-04-14 | ||||
| 44 | 3GQ4|1|B+ 3GQ4|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Lesion Recognition Complex 5 (LRC5) | X-ray diffraction | 1.7 | 23 | 2009-11-10 | ||||
| 45 | 1D2I|1|C+ 1D2I|1|D | DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER | X-ray diffraction | 1.7 | 32 | 2000-02-21 | ||||
| 46 | 3JR5|1|B+ 3JR5|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(OGX)P*AP*GP*TP*CP*TP*AP*CP*C)-3') | MutM lesion recognition control complex with N174C crosslinking site | X-ray diffraction | 1.704 | 29 | 2009-11-03 | ||||
| 47 | 3GPX|1|B+ 3GPX|1|C | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Interrogation Complex 4 (IC4) | X-ray diffraction | 1.78 | 24 | 2009-11-10 | ||||
| 48 | 1GU4|1|C+ 1GU4|1|D | 5'-D(*AP*AP*TP*AP*TP*TP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*AP*AP*TP*AP*T)-3' | synthetic construct | Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment | X-ray diffraction | 1.8 | 32 | 2003-06-26 | |||
| 49 | 3G99|1|C+ 3G99|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA binding domain:Pal complex-9 | X-ray diffraction | 1.81 | 32 | 2009-04-21 | ||||
| 50 | 3GQ3|1|B+ 3GQ3|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3') | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | X-ray diffraction | 1.83 | 27 | 2009-11-10 | ||||
| 51 | 3GPY|1|B+ 3GPY|1|C | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*T*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Lesion Recognition Complex 3 (LRC3) | X-ray diffraction | 1.85 | 31 | 2009-11-10 | ||||
| 52 | 3G9I|1|C+ 3G9I|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3') | GR DNA Binding domain: Pal complex-35 | X-ray diffraction | 1.85 | 0 | 2009-04-21 | ||||
| 53 | 1GTW|1|C+ 1GTW|1|D | 5'-D(*AP*AP*TP*GP*TP*GP*GP*CP*GP*CP* AP*AP*TP*CP*CP*T)-3', 5'-D(*TP*AP*GP*GP*AP*TP*TP*GP*CP*GP* CP*CP*AP*CP*AP*T)-3' | crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter | X-ray diffraction | 1.85 | 32 | 2004-02-06 | ||||
| 54 | 3GO8|1|B+ 3GO8|1|C | 5'-D(*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*C)-3', 5'-D(P*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*G)-3' | synthetic construct | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex | X-ray diffraction | 1.89 | 28 | 2009-12-15 | |||
| 55 | 3GQ5|1|B+ 3GQ5|1|C | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*GP*GP*GP*TP*CP*TP*AP*CP*C)-3') | Sequence-matched MutM Interrogation Complex 5 (IC5) | X-ray diffraction | 1.9 | 22 | 2009-11-10 | ||||
| 56 | 1CDW|1|B+ 1CDW|1|C | DNA (5'-D(*CP*AP*GP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*CP*TP*G)-3') | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | X-ray diffraction | 1.9 | 32 | 1996-12-23 | ||||
| 57 | 3G8U|1|C+ 3G8U|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*GP*GP*GP*TP*TP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*CP*CP*CP*AP*AP*TP*GP*TP*TP*CP*T)-3') | DNA binding domain:GilZ 16bp complex-5 | X-ray diffraction | 1.9 | 32 | 2009-04-21 | ||||
| 58 | 3G6U|1|C+ 3G6U|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3') | GR DNA-binding domain:FKBP5 16bp complex-49 | X-ray diffraction | 1.9 | 32 | 2009-04-21 | ||||
| 59 | 3OJS|1|C+ 3OJS|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines | X-ray diffraction | 1.9 | 28 | 2010-12-15 | ||||
| 60 | 3G6T|1|C+ 3G6T|1|D | DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3') | GR gamma DNA-binding domain:FKBP5 16bp complex-34 | X-ray diffraction | 1.9 | 32 | 2009-04-21 | ||||
| 61 | 1G2F|1|A+ 1G2F|1|B | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-ray diffraction | 2 | 32 | 2001-09-07 | ||||
| 62 | 3OJU|1|C+ 3OJU|1|B | DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') | Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies | X-ray diffraction | 2 | 26 | 2010-12-15 | ||||
| 63 | 1G2F|1|D+ 1G2F|1|E | 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3' | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-ray diffraction | 2 | 32 | 2001-09-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1L3S|1|C+ 1L3S|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment complexed to 9 base pairs of duplex DNA. | X-RAY DIFFRACTION | 1.7 | 23 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 2 | 3ISC|1|T+ 3ISC|1|P+ 3ISC|1|D | Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 3 | 3ISB|1|T+ 3ISB|1|P+ 3ISB|1|D | Binary complex of human DNA polymerase beta with a gapped DNA | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 4 | 1TV9|1|T+ 1TV9|1|P+ 1TV9|1|D | HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA CONTAINING A MISMATCHED TEMPLATE ADENINE AND INCOMING CYTIDINE | X-RAY DIFFRACTION | 2 | 32 | enzyme,polymerase,transferase | ||
| 5 | 3MBY|1|T+ 3MBY|1|P+ 3MBY|1|D | Ternary complex of DNA Polymerase BETA with template base A and 8oxodGTP in the active site with a dideoxy terminated primer | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 6 | 3JPS|1|T+ 3JPS|1|P+ 3JPS|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 7 | 3JPO|1|T+ 3JPO|1|P+ 3JPO|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monochloromethylene triphosphate | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 8 | 3JPQ|1|T+ 3JPQ|1|P+ 3JPQ|1|D | Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate | X-RAY DIFFRACTION | 1.9 | 31 | enzyme,polymerase,transferase | ||
| 9 | 2FMS|1|T+ 2FMS|1|P+ 2FMS|1|D | DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site | X-RAY DIFFRACTION | 2 | 31 | enzyme,polymerase,transferase | ||
| 10 | 2FMP|1|T+ 2FMP|1|P+ 2FMP|1|D | DNA Polymerase beta with a terminated gapped DNA substrate and ddCTP with sodium in the catalytic site | X-RAY DIFFRACTION | 1.65 | 31 | enzyme,polymerase,transferase | ||
| 11 | 1NK4|1|C+ 1NK4|1|B | GUANINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 1.6 | 19 | enzyme,polymerase,transferase | ||
| 12 | 3IAY|1|T+ 3IAY|1|P | Ternary complex of DNA polymerase delta | X-RAY DIFFRACTION | 2 | 28 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 13 | 3OJU|1|C+ 3OJU|1|B | Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5 modified thymidies | X-RAY DIFFRACTION | 2 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 14 | 3OJS|1|C+ 3OJS|1|B | Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines | X-RAY DIFFRACTION | 1.9 | 28 | double helix,structure | enzyme,polymerase,transferase | |
| 15 | 3M8R|1|C+ 3M8R|1|B | Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP | X-RAY DIFFRACTION | 2 | 28 | double helix,structure | enzyme,polymerase,transferase | |
| 16 | 1L3T|1|C+ 1L3T|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 10 base pairs of duplex DNA following addition of a single dTTP residue | X-RAY DIFFRACTION | 1.7 | 22 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 17 | 1NJZ|1|C+ 1NJZ|1|B | CYTOSINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase | |
| 18 | 1NJY|1|C+ 1NJY|1|B | THYMINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITE | X-RAY DIFFRACTION | 2 | 24 | B-form double helix,double helix,feature,mispair,structure | enzyme,polymerase,transferase | |
| 19 | 1L3U|1|C+ 1L3U|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 11 base pairs of duplex DNA following addition of a dTTP and a dATP residue. | X-RAY DIFFRACTION | 1.8 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 20 | 1NKE|1|C+ 1NKE|1|B | A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP. | X-RAY DIFFRACTION | 1.8 | 23 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 21 | 2HHU|1|C+ 2HHU|1|B | C:O6-methyl-guanine in the polymerase postinsertion site (-1 basepair position) | X-RAY DIFFRACTION | 1.8 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 22 | 2HW3|1|C+ 2HW3|1|B | T:O6-methyl-guanine pair in the polymerase postinsertion site (-1 basepair position) | X-RAY DIFFRACTION | 1.98 | 24 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 23 | 2HHV|1|C+ 2HHV|1|B | T:O6-methyl-guanine in the polymerase-2 basepair position | X-RAY DIFFRACTION | 1.55 | 27 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 24 | 1L5U|1|C+ 1L5U|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 12 base pairs of duplex DNA following addition of a dTTP, a dATP, and a dCTP residue. | X-RAY DIFFRACTION | 1.95 | 26 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 25 | 1L3V|1|C+ 1L3V|1|B | Crystal Structure of Bacillus DNA Polymerase I Fragment product complex with 15 base pairs of duplex DNA following addition of dTTP, dATP, dCTP, and dGTP residues. | X-RAY DIFFRACTION | 1.71 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 26 | 3BS1|1|B+ 3BS1|1|C | Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with a Novel Mode of Binding | X-RAY DIFFRACTION | 1.6 | 32 | B-form double helix,double helix,structure | regulatory,transcription | |
| 27 | 1N4L|1|B+ 1N4L|1|D | A DNA analogue of the polypurine tract of HIV-1 | X-RAY DIFFRACTION | 2 | 32 | enzyme,polymerase,transferase | ||
| 28 | 1DFM|1|C+ 1DFM|1|D | Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer | X-RAY DIFFRACTION | 1.5 | 32 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 29 | 1D2I|1|C+ 1D2I|1|D | CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER | X-RAY DIFFRACTION | 1.7 | 32 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 30 | 1G2F|1|A+ 1G2F|1|B | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-RAY DIFFRACTION | 2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 31 | 1G2F|1|D+ 1G2F|1|E | STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) | X-RAY DIFFRACTION | 2 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 32 | 3MFH|1|T+ 3MFH|1|P | DNA Polymerase Eta in Complex With Undamaged DNA | X-RAY DIFFRACTION | 2 | 24 | double helix,structure | enzyme,polymerase,transferase | |
| 33 | 3OHB|1|T+ 3OHB|1|P | Yeast DNA polymerase eta extending from an 8-oxoG lesion | X-RAY DIFFRACTION | 2 | 24 | double helix,structure | enzyme,polymerase,transferase | |
| 34 | 1DP7|1|D | COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE | X-RAY DIFFRACTION | 1.5 | 16 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 35 | 1GTW|1|C+ 1GTW|1|D | crystal structure of C/EBPbeta bZip homodimer bound to a DNA fragment from the tom-1A promoter | X-RAY DIFFRACTION | 1.85 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 36 | 1GU4|1|C+ 1GU4|1|D | Crystal structure of C/EBPBETA BZIP homodimer bound to a high affinity DNA fragment | X-RAY DIFFRACTION | 1.8 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 37 | 2E42|1|C+ 2E42|1|D | Crystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to A High Affinity DNA fragment | X-RAY DIFFRACTION | 1.8 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 38 | 3G6T|1|C+ 3G6T|1|D | GR gamma DNA-binding domain:FKBP5 16bp complex-34 | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 39 | 3G6U|1|C+ 3G6U|1|D | GR DNA-binding domain:FKBP5 16bp complex-49 | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 40 | 3G8U|1|C+ 3G8U|1|D | DNA binding domain:GilZ 16bp complex-5 | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 41 | 3G99|1|C+ 3G99|1|D | GR DNA binding domain:Pal complex-9 | X-RAY DIFFRACTION | 1.81 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 42 | 3G9P|1|C+ 3G9P|1|D | GR DNA binding domain:Sgk 16bp complex-7 | X-RAY DIFFRACTION | 1.652 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 43 | 3G9O|1|C+ 3G9O|1|D | GR DNA-binding domain:Sgk 16bp complex-9 | X-RAY DIFFRACTION | 1.65 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 44 | 3G9M|1|C+ 3G9M|1|D | GR DNA-binding domain:Sgk 16bp complex-44 | X-RAY DIFFRACTION | 1.61 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 45 | 3FYL|1|C+ 3FYL|1|D | GR DNA binding domain:CGT complex | X-RAY DIFFRACTION | 1.63 | 32 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 46 | 3G9I|1|C+ 3G9I|1|D | GR DNA Binding domain: Pal complex-35 | X-RAY DIFFRACTION | 1.85 | 0 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 47 | 2VE9|1|I+ 2VE9|1|J | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-RAY DIFFRACTION | 1.9 | 30 | B-form double helix,double helix,structure | cell cycle,regulatory | |
| 48 | 2VE9|1|K+ 2VE9|1|L | Xray structure of KOPS bound gamma domain of FtsK (P. aeruginosa) | X-RAY DIFFRACTION | 1.9 | 30 | B-form double helix,double helix,structure | cell cycle,regulatory | |
| 49 | 1NH2|1|E+ 1NH2|1|F | Crystal structure of a yeast TFIIA/TBP/DNA complex | X-RAY DIFFRACTION | 1.9 | 32 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 50 | 3GO8|1|B+ 3GO8|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-loop deletion complex | X-RAY DIFFRACTION | 1.89 | 28 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 51 | 3GPU|1|B+ 3GPU|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | X-RAY DIFFRACTION | 1.62 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 52 | 3GPX|1|B+ 3GPX|1|C | Sequence-matched MutM Interrogation Complex 4 (IC4) | X-RAY DIFFRACTION | 1.78 | 24 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 53 | 2F5N|1|B+ 2F5N|1|C | MutM crosslinked to undamaged DNA sampling A:T base pair IC1 | X-RAY DIFFRACTION | 2 | 27 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 54 | 3JR5|1|B+ 3JR5|1|C | MutM lesion recognition control complex with N174C crosslinking site | X-RAY DIFFRACTION | 1.704 | 29 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 55 | 3GPY|1|B+ 3GPY|1|C | Sequence-matched MutM Lesion Recognition Complex 3 (LRC3) | X-RAY DIFFRACTION | 1.85 | 31 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 56 | 3GQ5|1|B+ 3GQ5|1|C | Sequence-matched MutM Interrogation Complex 5 (IC5) | X-RAY DIFFRACTION | 1.9 | 22 | double helix,structure | enzyme,hydrolase | |
| 57 | 3GQ3|1|B+ 3GQ3|1|C | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | X-RAY DIFFRACTION | 1.83 | 27 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 58 | 2F5P|1|C+ 2F5P|1|D | MutM crosslinked to undamaged DNA sampling A:T base pair IC2 | X-RAY DIFFRACTION | 2 | 25 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 59 | 3GQ4|1|B+ 3GQ4|1|C | Sequence-matched MutM Lesion Recognition Complex 5 (LRC5) | X-RAY DIFFRACTION | 1.7 | 23 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 60 | 1L1Z|1|B+ 1L1Z|1|C | MutM (Fpg) Covalent-DNA Intermediate | X-RAY DIFFRACTION | 1.7 | 23 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 61 | 1L1T|1|B+ 1L1T|1|C | MutM (Fpg) Bound to Abasic-Site Containing DNA | X-RAY DIFFRACTION | 1.8 | 23 | double helix,structure | enzyme,hydrolase | |
| 62 | 1L2D|1|B+ 1L2D|1|C | MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex | X-RAY DIFFRACTION | 2 | 23 | double helix,structure | enzyme,hydrolase | |
| 63 | 1CDW|1|B+ 1CDW|1|C | HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA | X-RAY DIFFRACTION | 1.9 | 32 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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