Equivalence class DNA_2.5_03402.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3BSE|1|A+ 3BSE|1|B (rep) | DNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3') | Crystal structure analysis of a 16-base-pair B-DNA | X-ray diffraction | 1.6 | 34 | 2008-12-23 | ||||
| 2 | 3NCI|1|T+ 3NCI|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution | X-ray diffraction | 1.79 | 31 | 2011-02-02 | ||||
| 3 | 2W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H | 5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3' | Escherichia coli | Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation | X-ray diffraction | 1.85 | 72 | 2009-02-17 | |||
| 4 | 1JX4|1|T+ 1JX4|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*TP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-ray diffraction | 1.7 | 30 | 2001-10-05 | ||||
| 5 | 3K57|1|T+ 3K57|1|P | DNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3') | Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex | X-ray diffraction | 2.08 | 30 | 2010-02-09 | ||||
| 6 | 3NGI|1|T+ 3NGI|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dG | X-ray diffraction | 1.886 | 31 | 2011-01-26 | ||||
| 7 | 1S9F|1|I+ 1S9F|1|E | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO with AT matched | X-ray diffraction | 2 | 30 | 2005-02-15 | ||||
| 8 | 1S9F|1|J+ 1S9F|1|F | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO with AT matched | X-ray diffraction | 2 | 30 | 2005-02-15 | ||||
| 9 | 1S9F|1|K+ 1S9F|1|G | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO with AT matched | X-ray diffraction | 2 | 30 | 2005-02-15 | ||||
| 10 | 1S9F|1|L+ 1S9F|1|H | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO with AT matched | X-ray diffraction | 2 | 30 | 2005-02-15 | ||||
| 11 | 2OG0|1|C+ 2OG0|1|D | 5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3' | Crystal Structure of the Lambda Xis-DNA complex | X-ray diffraction | 1.9 | 36 | 2007-03-13 | ||||
| 12 | 3NDK|1|T+ 3NDK|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG | X-ray diffraction | 2 | 31 | 2011-01-26 | ||||
| 13 | 3NAE|1|T+ 3NAE|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin | X-ray diffraction | 2.003 | 31 | 2010-09-15 | ||||
| 14 | 3NE6|1|T+ 3NE6|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dG | X-ray diffraction | 2.001 | 31 | 2011-01-26 | ||||
| 15 | 3CFP|1|T+ 3CFP|1|P | DNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*(DOC))-3') | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1 | X-ray diffraction | 2.5 | 32 | 2009-03-10 | ||||
| 16 | 2JEJ|1|T+ 2JEJ|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*CP*G)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 1.86 | 33 | 2007-03-13 | ||||
| 17 | 1WB9|1|E+ 1WB9|1|F | 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3' | Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatch | X-ray diffraction | 2.1 | 35 | 2006-01-18 | ||||
| 18 | 1RYS|1|D+ 1RYS|1|C | 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-ray diffraction | 2.03 | 31 | 2004-02-10 | ||||
| 19 | 1RYS|1|F+ 1RYS|1|E | 5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-ray diffraction | 2.03 | 31 | 2004-02-10 | ||||
| 20 | 3DW9|1|E+ 3DW9|1|F | DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3') | SgrAI with cognate DNA and manganese bound | X-ray diffraction | 2.2 | 36 | 2008-08-19 | ||||
| 21 | 3DVO|1|E+ 3DVO|1|F | DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3') | synthetic construct | SgrAI with cognate DNA and calcium bound | X-ray diffraction | 1.892 | 36 | 2008-08-19 | |||
| 22 | 3DVO|1|G+ 3DVO|1|H | DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3') | synthetic construct | SgrAI with cognate DNA and calcium bound | X-ray diffraction | 1.892 | 36 | 2008-08-19 | |||
| 23 | 2XC9|1|T+ 2XC9|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*G)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP*TP*TP* CP*CP*CP*CP*C)-3' | synthetic construct | BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORM | X-ray diffraction | 2.2 | 31 | 2010-09-08 | |||
| 24 | 3M9N|1|T+ 3M9N|1|P | DNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3') | synthetic construct | Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion | X-ray diffraction | 1.93 | 28 | 2010-06-16 | |||
| 25 | 3L8B|1|C+ 3L8B|1|D | DNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3') | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-ray diffraction | 2.15 | 29 | 2010-03-09 | ||||
| 26 | 3L8B|1|E+ 3L8B|1|F | DNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3') | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-ray diffraction | 2.15 | 29 | 2010-03-09 | ||||
| 27 | 2BQ3|1|T+ 2BQ3|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2 | 31 | 2005-06-22 | ||||
| 28 | 2UVW|1|T+ 2UVW|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3' | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-ray diffraction | 2.09 | 31 | 2007-05-08 | ||||
| 29 | 3OSN|1|B+ 3OSN|1|C | 5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3' | Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase Iota | X-ray diffraction | 1.9 | 15 | 2010-10-20 | ||||
| 30 | 2BQU|1|T+ 2BQU|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2.5 | 30 | 2005-06-23 | ||||
| 31 | 2W9B|1|E+ 2W9B|1|C | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-ray diffraction | 2.28 | 30 | 2009-05-12 | ||||
| 32 | 2W9B|1|F+ 2W9B|1|D | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-ray diffraction | 2.28 | 30 | 2009-05-12 | ||||
| 33 | 2UVV|1|T+ 2UVV|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3' | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-ray diffraction | 2.2 | 30 | 2007-05-08 | ||||
| 34 | 2C28|1|T+ 2C28|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3' | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-ray diffraction | 2.27 | 30 | 2005-11-29 | ||||
| 35 | 2BQR|1|T+ 2BQR|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2.37 | 30 | 2005-06-23 | ||||
| 36 | 3NHG|1|T+ 3NHG|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dG | X-ray diffraction | 2.5 | 31 | 2011-01-26 | ||||
| 37 | 1B3T|1|C+ 1B3T|1|D | DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3') | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX | X-ray diffraction | 2.2 | 36 | 1998-12-15 | ||||
| 38 | 2BR0|1|T+ 2BR0|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-ray diffraction | 2.17 | 30 | 2005-06-23 | ||||
| 39 | 3LZI|1|T+ 3LZI|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine | X-ray diffraction | 2.3 | 31 | 2010-05-12 | ||||
| 40 | 3GIJ|1|E+ 3GIJ|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-ray diffraction | 2.4 | 31 | 2009-05-19 | ||||
| 41 | 3GIJ|1|J+ 3GIJ|1|H | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-ray diffraction | 2.4 | 27 | 2009-05-19 | ||||
| 42 | 2JEF|1|T+ 2JEF|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3' | The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 2.17 | 30 | 2007-03-13 | ||||
| 43 | 2XCA|1|T+ 2XCA|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3' | synthetic construct | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORM | X-ray diffraction | 2.5 | 30 | 2010-09-08 | |||
| 44 | 2JEG|1|T+ 2JEG|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3' | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 2.38 | 31 | 2007-03-13 | ||||
| 45 | 2JEI|1|T+ 2JEI|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-ray diffraction | 2.39 | 30 | 2007-03-13 | ||||
| 46 | 2J6U|1|T+ 2J6U|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C G32P*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | synthetic construct | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP. | X-ray diffraction | 2.5 | 31 | 2006-11-22 | |||
| 47 | 2R8I|1|T+ 2R8I|1|P | DNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3'), DNA (5'-D(*DTP*DCP*DAP*DTP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3') | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-ray diffraction | 2.38 | 31 | 2008-07-22 | ||||
| 48 | 1S97|1|I+ 1S97|1|E | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 30 | 2004-04-27 | ||||
| 49 | 1S97|1|J+ 1S97|1|F | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 30 | 2004-04-27 | ||||
| 50 | 1S97|1|K+ 1S97|1|G | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 30 | 2004-04-27 | ||||
| 51 | 1S97|1|L+ 1S97|1|H | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3' | DPO4 with GT mismatch | X-ray diffraction | 2.4 | 30 | 2004-04-27 | ||||
| 52 | 1WBD|1|E+ 1WBD|1|F | 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3' | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatch | X-ray diffraction | 2.4 | 35 | 2006-01-18 | ||||
| 53 | 2DTU|1|E+ 2DTU|1|F | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 33 | 2006-12-05 | ||||
| 54 | 2DTU|1|G+ 2DTU|1|H | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 33 | 2006-12-05 | ||||
| 55 | 2DTU|1|I+ 2DTU|1|J | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 33 | 2006-12-05 | ||||
| 56 | 2DTU|1|K+ 2DTU|1|L | 5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3' | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-ray diffraction | 2.37 | 33 | 2006-12-05 | ||||
| 57 | 1R0O|1|C+ 1R0O|1|D | Ecdysone Response Element | Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex | X-ray diffraction | 2.24 | 36 | 2003-10-21 | ||||
| 58 | 2BNW|1|E+ 2BNW|1|F | 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3' | synthetic construct | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-ray diffraction | 2.45 | 36 | 2006-03-15 | |||
| 59 | 2BNW|1|G+ 2BNW|1|H | 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3' | synthetic construct | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-ray diffraction | 2.45 | 36 | 2006-03-15 | |||
| 60 | 3CFR|1|T+ 3CFR|1|P | DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3'), DNA (5'-D(*DTP*DCP*DAP*DAP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3') | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2 | X-ray diffraction | 2.4 | 31 | 2009-03-10 | ||||
| 61 | 1WBB|1|E+ 1WBB|1|F | 5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3' | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatch | X-ray diffraction | 2.5 | 35 | 2006-01-18 | ||||
| 62 | 2R8H|1|T+ 2R8H|1|P | DNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3'), DNA (5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3') | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-ray diffraction | 2.48 | 31 | 2008-07-22 | ||||
| 63 | 2J6S|1|T+ 2J6S|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3' | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | X-ray diffraction | 2.5 | 30 | 2006-11-22 | ||||
| 64 | 3CQ8|1|T+ 3CQ8|1|P | DNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*DC)-3') | Ternary complex of the L415F mutant RB69 exo(-)polymerase | X-ray diffraction | 2.5 | 32 | 2008-09-02 | ||||
| 65 | 3EPG|1|B+ 3EPG|1|C | 5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3' | Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine | X-ray diffraction | 2.5 | 15 | 2008-12-16 | ||||
| 66 | 2V4R|1|T+ 2V4R|1|P | 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3' | synthetic construct | Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine | X-ray diffraction | 2.5 | 30 | 2009-06-16 | |||
| 67 | 3LZJ|1|T+ 3LZJ|1|P | DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') | RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine | X-ray diffraction | 2.05 | 31 | 2010-05-19 | ||||
| 68 | 2NL8|1|W | 18-nt PEN element of the SV40 DNA origin | The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3) | X-ray diffraction | 2.3 | 18 | 2006-12-12 | ||||
| 69 | 2NLL|1|C+ 2NLL|1|D | DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3') | RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA | X-ray diffraction | 1.9 | 36 | 1997-03-12 | ||||
| 70 | 3G6P|1|C+ 3G6P|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3') | GR DNA binding domain:FKBP5 complex, 18bp | X-ray diffraction | 1.985 | 36 | 2009-04-21 | ||||
| 71 | 1NLW|1|F+ 1NLW|1|G | 5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Mad-Max recognizing DNA | X-ray diffraction | 2 | 36 | 2003-02-04 | ||||
| 72 | 1NLW|1|H+ 1NLW|1|J | 5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Mad-Max recognizing DNA | X-ray diffraction | 2 | 36 | 2003-02-04 | ||||
| 73 | 1BG1|1|B | DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3') | TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX | X-ray diffraction | 2.25 | 18 | 1999-01-13 | ||||
| 74 | 3G6R|1|C+ 3G6R|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3') | GR DNA binding domain:FKBP5 complex-52, 18bp | X-ray diffraction | 2.3 | 36 | 2009-04-21 | ||||
| 75 | 3G9J|1|C+ 3G9J|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*TP*G)-3') | GR DNA binding domain:Pal, 18bp complex-36 | X-ray diffraction | 2.32 | 36 | 2009-04-21 | ||||
| 76 | 1HCQ|1|C+ 1HCQ|1|D | DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3') | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-ray diffraction | 2.4 | 36 | 1995-11-23 | ||||
| 77 | 1HCQ|1|G+ 1HCQ|1|H | DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3') | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-ray diffraction | 2.4 | 36 | 1995-11-23 | ||||
| 78 | 2C7A|1|C+ 2C7A|1|D | 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP *CP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP *TP*TP*GP*TP*TP*CP*TP*G)-3' | Homo sapiens | STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX | X-ray diffraction | 2.5 | 36 | 2006-08-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 3K57|1|T+ 3K57|1|P | Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex | X-RAY DIFFRACTION | 2.08 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 2 | 3LZI|1|T+ 3LZI|1|P | RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanine | X-RAY DIFFRACTION | 2.3 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 3 | 3LZJ|1|T+ 3LZJ|1|P | RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanine | X-RAY DIFFRACTION | 2.05 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 4 | 3L8B|1|C+ 3L8B|1|D | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-RAY DIFFRACTION | 2.15 | 29 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 5 | 3L8B|1|E+ 3L8B|1|F | Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoin | X-RAY DIFFRACTION | 2.15 | 29 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 6 | 2DTU|1|G+ 2DTU|1|H | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 33 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 7 | 2DTU|1|E+ 2DTU|1|F | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 33 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 8 | 2DTU|1|K+ 2DTU|1|L | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 33 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 9 | 2DTU|1|I+ 2DTU|1|J | Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analog | X-RAY DIFFRACTION | 2.37 | 33 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 10 | 3CFP|1|T+ 3CFP|1|P | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1 | X-RAY DIFFRACTION | 2.5 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 11 | 3CQ8|1|T+ 3CQ8|1|P | Ternary complex of the L415F mutant RB69 exo(-)polymerase | X-RAY DIFFRACTION | 2.5 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 12 | 1RYS|1|F+ 1RYS|1|E | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 2.03 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 13 | 3M9N|1|T+ 3M9N|1|P | Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion | X-RAY DIFFRACTION | 1.93 | 28 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 14 | 1RYS|1|D+ 1RYS|1|C | REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 2.03 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 15 | 3CFR|1|T+ 3CFR|1|P | Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2 | X-RAY DIFFRACTION | 2.4 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 16 | 3NHG|1|T+ 3NHG|1|P | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dG | X-RAY DIFFRACTION | 2.5 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 17 | 3NGI|1|T+ 3NGI|1|P | RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dG | X-RAY DIFFRACTION | 1.886 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 18 | 3NAE|1|T+ 3NAE|1|P | RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite Guanidinohydantoin | X-RAY DIFFRACTION | 2.003 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 19 | 3NDK|1|T+ 3NDK|1|P | RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG | X-RAY DIFFRACTION | 2 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 20 | 3NE6|1|T+ 3NE6|1|P | RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dG | X-RAY DIFFRACTION | 2.001 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 21 | 3NCI|1|T+ 3NCI|1|P | RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolution | X-RAY DIFFRACTION | 1.79 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 22 | 2JEG|1|T+ 2JEG|1|P | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 2.38 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 23 | 2UVV|1|T+ 2UVV|1|P | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-RAY DIFFRACTION | 2.2 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 24 | 2JEJ|1|T+ 2JEJ|1|P | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 1.86 | 33 | enzyme,polymerase,transferase | ||
| 25 | 2JEI|1|T+ 2JEI|1|P | The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 2.39 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 26 | 2J6U|1|T+ 2J6U|1|P | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP. | X-RAY DIFFRACTION | 2.5 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 27 | 2UVW|1|T+ 2UVW|1|P | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs | X-RAY DIFFRACTION | 2.09 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 28 | 2BQ3|1|T+ 2BQ3|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 29 | 2BQR|1|T+ 2BQR|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2.37 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 30 | 2BQU|1|T+ 2BQU|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2.5 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 31 | 2XCA|1|T+ 2XCA|1|P | TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORM | X-RAY DIFFRACTION | 2.5 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 32 | 2R8I|1|T+ 2R8I|1|P | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-RAY DIFFRACTION | 2.38 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 33 | 2R8H|1|T+ 2R8H|1|P | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-RAY DIFFRACTION | 2.48 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 34 | 2J6S|1|T+ 2J6S|1|P | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | X-RAY DIFFRACTION | 2.5 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 35 | 2V4R|1|T+ 2V4R|1|P | Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine | X-RAY DIFFRACTION | 2.5 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 36 | 2C28|1|T+ 2C28|1|P | Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4 | X-RAY DIFFRACTION | 2.27 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 37 | 2BR0|1|T+ 2BR0|1|P | DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine | X-RAY DIFFRACTION | 2.17 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 38 | 2JEF|1|T+ 2JEF|1|P | The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect Pairing | X-RAY DIFFRACTION | 2.17 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 39 | 2W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H | Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation | X-RAY DIFFRACTION | 1.85 | 72 | B-form double helix,double helix,structure | regulatory,transcription | |
| 40 | 2OG0|1|C+ 2OG0|1|D | Crystal Structure of the Lambda Xis-DNA complex | X-RAY DIFFRACTION | 1.9 | 36 | B-form double helix,double helix,structure | enzyme,recombinase | |
| 41 | 1BG1|1|B | TRANSCRIPTION FACTOR STAT3B/DNA COMPLEX | X-RAY DIFFRACTION | 2.25 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription | |
| 42 | 3G9J|1|C+ 3G9J|1|D | GR DNA binding domain:Pal, 18bp complex-36 | X-RAY DIFFRACTION | 2.32 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 43 | 3G6R|1|C+ 3G6R|1|D | GR DNA binding domain:FKBP5 complex-52, 18bp | X-RAY DIFFRACTION | 2.3 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 44 | 2C7A|1|C+ 2C7A|1|D | STRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX | X-RAY DIFFRACTION | 2.5 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 45 | 3G6P|1|C+ 3G6P|1|D | GR DNA binding domain:FKBP5 complex, 18bp | X-RAY DIFFRACTION | 1.985 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 46 | 1HCQ|1|C+ 1HCQ|1|D | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-RAY DIFFRACTION | 2.4 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 47 | 1HCQ|1|G+ 1HCQ|1|H | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS | X-RAY DIFFRACTION | 2.4 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 48 | 2NLL|1|C+ 2NLL|1|D | RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNA | X-RAY DIFFRACTION | 1.9 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 49 | 2BNW|1|E+ 2BNW|1|F | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-RAY DIFFRACTION | 2.45 | 36 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 50 | 2BNW|1|G+ 2BNW|1|H | Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats | X-RAY DIFFRACTION | 2.45 | 36 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 51 | 3BSE|1|A+ 3BSE|1|B | Crystal structure analysis of a 16-base-pair B-DNA | X-RAY DIFFRACTION | 1.6 | 34 | B-form double helix,double helix,structure | ||
| 52 | 1NLW|1|H+ 1NLW|1|J | Crystal structure of Mad-Max recognizing DNA | X-RAY DIFFRACTION | 2 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 53 | 1NLW|1|F+ 1NLW|1|G | Crystal structure of Mad-Max recognizing DNA | X-RAY DIFFRACTION | 2 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 54 | 3OSN|1|B+ 3OSN|1|C | Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase Iota | X-RAY DIFFRACTION | 1.9 | 15 | enzyme,polymerase,transferase | ||
| 55 | 3EPG|1|B+ 3EPG|1|C | Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine | X-RAY DIFFRACTION | 2.5 | 15 | enzyme,polymerase,transferase | ||
| 56 | 1B3T|1|C+ 1B3T|1|D | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX | X-RAY DIFFRACTION | 2.2 | 36 | B-form double helix,double helix,structure | regulatory,transcription | |
| 57 | 1R0O|1|C+ 1R0O|1|D | Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex | X-RAY DIFFRACTION | 2.24 | 36 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 58 | 3DVO|1|G+ 3DVO|1|H | SgrAI with cognate DNA and calcium bound | X-RAY DIFFRACTION | 1.892 | 36 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 59 | 3DVO|1|E+ 3DVO|1|F | SgrAI with cognate DNA and calcium bound | X-RAY DIFFRACTION | 1.892 | 36 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 60 | 3DW9|1|E+ 3DW9|1|F | SgrAI with cognate DNA and manganese bound | X-RAY DIFFRACTION | 2.2 | 36 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 61 | 2NL8|1|W | The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3) | X-RAY DIFFRACTION | 2.3 | 18 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,enzyme,helicase,hydrolase,regulatory | |
| 62 | 2W9B|1|F+ 2W9B|1|D | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-RAY DIFFRACTION | 2.28 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 63 | 2XC9|1|T+ 2XC9|1|P | BINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORM | X-RAY DIFFRACTION | 2.2 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 64 | 2W9B|1|E+ 2W9B|1|C | Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA | X-RAY DIFFRACTION | 2.28 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 65 | 1S9F|1|L+ 1S9F|1|H | DPO with AT matched | X-RAY DIFFRACTION | 2 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 66 | 1S97|1|L+ 1S97|1|H | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 67 | 1S9F|1|I+ 1S9F|1|E | DPO with AT matched | X-RAY DIFFRACTION | 2 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 68 | 1JX4|1|T+ 1JX4|1|P | Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide | X-RAY DIFFRACTION | 1.7 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 69 | 1S97|1|I+ 1S97|1|E | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 70 | 1S97|1|J+ 1S97|1|F | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 71 | 1S97|1|K+ 1S97|1|G | DPO4 with GT mismatch | X-RAY DIFFRACTION | 2.4 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 72 | 1S9F|1|K+ 1S9F|1|G | DPO with AT matched | X-RAY DIFFRACTION | 2 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 73 | 1S9F|1|J+ 1S9F|1|F | DPO with AT matched | X-RAY DIFFRACTION | 2 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 74 | 3GIJ|1|E+ 3GIJ|1|D | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-RAY DIFFRACTION | 2.4 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 75 | 3GIJ|1|J+ 3GIJ|1|H | Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs | X-RAY DIFFRACTION | 2.4 | 27 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 76 | 1WBD|1|E+ 1WBD|1|F | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatch | X-RAY DIFFRACTION | 2.4 | 35 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory | |
| 77 | 1WB9|1|E+ 1WB9|1|F | Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatch | X-RAY DIFFRACTION | 2.1 | 35 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory | |
| 78 | 1WBB|1|E+ 1WBB|1|F | Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatch | X-RAY DIFFRACTION | 2.5 | 35 | B-form double helix,double helix,feature,mispair,structure | DNA replication/repair,regulatory |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: