Equivalence class DNA_2.5_52460.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1EGW|1|E+ 1EGW|1|F (rep) | DNA (5'-D(*AP*AP*AP*GP*CP*TP*AP*TP*TP*AP*TP*TP*AP*GP*CP*TP*T)-3'), DNA (5'-D(*TP*AP*AP*GP*CP*TP*AP*AP*TP*AP*AP*TP*AP*GP*CP*TP*T)-3') | CRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA | X-ray diffraction | 1.5 | 34 | 2000-03-20 | ||||
| 2 | 1EGW|1|G+ 1EGW|1|H | DNA (5'-D(*AP*AP*AP*GP*CP*TP*AP*TP*TP*AP*TP*TP*AP*GP*CP*TP*T)-3'), DNA (5'-D(*TP*AP*AP*GP*CP*TP*AP*AP*TP*AP*AP*TP*AP*GP*CP*TP*T)-3') | CRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA | X-ray diffraction | 1.5 | 0 | 2000-03-20 | ||||
| 3 | 1R71|1|E+ 1R71|1|F | 5'-D(*AP*(BRU)P*TP*TP*TP*AP*GP*CP*GP*GP*CP*TP*AP*AP*AP*AP*G)-3', 5'-D(*CP*(BRU)P*TP*TP*TP*AP*GP*CP*CP*GP*CP*TP*AP*AP*AP*AP*(BRU))-3' | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-ray diffraction | 2.2 | 34 | 2004-06-01 | ||||
| 4 | 1R71|1|G+ 1R71|1|H | 5'-D(*AP*(BRU)P*TP*TP*TP*AP*GP*CP*GP*GP*CP*TP*AP*AP*AP*AP*G)-3', 5'-D(*CP*(BRU)P*TP*TP*TP*AP*GP*CP*CP*GP*CP*TP*AP*AP*AP*AP*(BRU))-3' | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-ray diffraction | 2.2 | 34 | 2004-06-01 | ||||
| 5 | 1R71|1|I+ 1R71|1|J | 5'-D(*AP*(BRU)P*TP*TP*TP*AP*GP*CP*GP*GP*CP*TP*AP*AP*AP*AP*G)-3', 5'-D(*CP*(BRU)P*TP*TP*TP*AP*GP*CP*CP*GP*CP*TP*AP*AP*AP*AP*(BRU))-3' | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-ray diffraction | 2.2 | 34 | 2004-06-01 | ||||
| 6 | 1R71|1|K+ 1R71|1|L | 5'-D(*AP*(BRU)P*TP*TP*TP*AP*GP*CP*GP*GP*CP*TP*AP*AP*AP*AP*G)-3', 5'-D(*CP*(BRU)P*TP*TP*TP*AP*GP*CP*CP*GP*CP*TP*AP*AP*AP*AP*(BRU))-3' | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-ray diffraction | 2.2 | 34 | 2004-06-01 | ||||
| 7 | 2E1C|1|B+ 2E1C|1|D | DNA (5'-D(*DAP*DGP*DTP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DCP*DAP*DCP*DA)-3'), DNA (5'-D(*DTP*DGP*DTP*DGP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DAP*DCP*DT)-3') | Structure of Putative HTH-type transcriptional regulator PH1519/DNA Complex | X-ray diffraction | 2.1 | 34 | 2007-12-04 | ||||
| 8 | 1IAW|1|C+ 1IAW|1|D | 5'-D(*TP*GP*CP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*TP*GP*GP*C)-3' | CRYSTAL STRUCTURE OF NAEI COMPLEXED WITH 17MER DNA | X-ray diffraction | 2.4 | 33 | 2001-08-03 | ||||
| 9 | 1SGS|1|A | kB DNA | Crystal structure of a free kB DNA | X-ray diffraction | 1.6 | 17 | 2004-03-23 | ||||
| 10 | 2BOP|1|B | DNA (5'-D(*CP*CP*GP*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*TP*CP*G )-3') | CRYSTAL STRUCTURE AT 1.7 ANGSTROMS OF THE BOVINE PAPILLOMAVIRUS-1 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET | X-ray diffraction | 1.7 | 17 | 1994-01-31 | ||||
| 11 | 1W0U|1|C+ 1W0U|1|D | 5'-D(*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP *CP*CP*CP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP *GP*GP*GP*TP*TP*AP*G)-3' | hTRF2 DNA-binding domain in complex with telomeric DNA. | X-ray diffraction | 1.8 | 33 | 2004-12-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1SGS|1|A | Crystal structure of a free kB DNA | X-RAY DIFFRACTION | 1.6 | 17 | B-form double helix,double helix,structure | ||
| 2 | 1W0U|1|C+ 1W0U|1|D | hTRF2 DNA-binding domain in complex with telomeric DNA. | X-RAY DIFFRACTION | 1.8 | 33 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 3 | 1R71|1|G+ 1R71|1|H | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-RAY DIFFRACTION | 2.2 | 34 | B-form double helix,double helix,structure | regulatory,transcription | |
| 4 | 1R71|1|E+ 1R71|1|F | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-RAY DIFFRACTION | 2.2 | 34 | B-form double helix,double helix,structure | regulatory,transcription | |
| 5 | 1R71|1|K+ 1R71|1|L | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-RAY DIFFRACTION | 2.2 | 34 | B-form double helix,double helix,structure | regulatory,transcription | |
| 6 | 1R71|1|I+ 1R71|1|J | Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA | X-RAY DIFFRACTION | 2.2 | 34 | B-form double helix,double helix,structure | regulatory,transcription | |
| 7 | 1IAW|1|C+ 1IAW|1|D | CRYSTAL STRUCTURE OF NAEI COMPLEXED WITH 17MER DNA | X-RAY DIFFRACTION | 2.4 | 33 | enzyme,hydrolase,nuclease | ||
| 8 | 1EGW|1|E+ 1EGW|1|F | CRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA | X-RAY DIFFRACTION | 1.5 | 34 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription | |
| 9 | 1EGW|1|G+ 1EGW|1|H | CRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA | X-RAY DIFFRACTION | 1.5 | 0 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MADS box,other α-helix,regulatory,transcription | |
| 10 | 2E1C|1|B+ 2E1C|1|D | Structure of Putative HTH-type transcriptional regulator PH1519/DNA Complex | X-RAY DIFFRACTION | 2.1 | 34 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 11 | 2BOP|1|B | CRYSTAL STRUCTURE AT 1.7 ANGSTROMS OF THE BOVINE PAPILLOMAVIRUS-1 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET | X-RAY DIFFRACTION | 1.7 | 17 | B-form double helix,double helix,structure | regulatory,transcription |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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