#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
11X9M|1|D+ 1X9M|1|C (rep)5'-D(*CP*CP*CP*(8FG)P*AP*TP*CP*AP*CP*AP*CP*TP*AP*CP*CP*AP*AP*TP*CP*AP*CP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*GP*TP*GP*AP*TP*TP*GP*GP*TP*AP*GP*TP*GP*TP*GP*AP*(2DT))-3'T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNAX-ray diffraction2.1222004-10-26
21TK5|1|T+ 1TK5|1|P5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*A*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG)P*TP*GP*CP*AP*A)-3'T7 DNA polymerase binary complex with 8 oxo guanosine in the templating strandX-ray diffraction2.2242004-08-31
31X9W|1|D+ 1X9W|1|C5'-D(*CP*CP*CP*(AFG)*AP*TP*CP*AP*CP*AP*CP*TP*AP*CP*CP*AP*AP*TP*CP*AP*CP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*GP*TP*GP*AP*TP*T*GP*GP*T*AP*GP*TP*GP*TP*GP*AP*(2DT))-3'T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.X-ray diffraction2.3222004-10-26
41TK0|1|T+ 1TK0|1|P5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*A*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG))-3'T7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion siteX-ray diffraction2.3292004-08-31
51TKD|1|T+ 1TKD|1|PDNA (5'-D(*CP*CP*CP*AP*(8OG)P*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3'), DNA (5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DOC))-3')T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation siteX-ray diffraction2.49352004-08-31
61TK8|1|T+ 1TK8|1|P5'-D(*CP*CP*CP*AP*(8OG)P*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(2DA))-3'T7 DNA polymerase ternary complex with 8 oxo guanosine and dAMP at the elongation siteX-ray diffraction2.5372004-08-31
71SKR|1|T+ 1SKR|1|P5'-D(*CP*CP*CP*TP*TP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*C*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(2DA))-3'T7 DNA Polymerase Complexed To DNA Primer/Template and ddATPX-ray diffraction2.4242004-07-06
83H0D|1|C+ 3H0D|1|DDNA (26-MER)Crystal structure of CtsR in complex with a 26bp DNA duplexX-ray diffraction2.4522009-06-30
96PAX|1|B+ 6PAX|1|C26 NUCLEOTIDE DNACRYSTAL STRUCTURE OF THE HUMAN PAX-6 PAIRED DOMAIN-DNA COMPLEX REVEALS A GENERAL MODEL FOR PAX PROTEIN-DNA INTERACTIONSX-ray diffraction2.5521999-07-13
101H8A|1|D+ 1H8A|1|EDNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3')Homo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3X-ray diffraction2.23522002-01-28
111H89|1|D+ 1H89|1|EDNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3'), DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3')Homo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2X-ray diffraction2.45522002-01-28

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
11TK8|1|T+ 1TK8|1|PT7 DNA polymerase ternary complex with 8 oxo guanosine and dAMP at the elongation siteX-RAY DIFFRACTION2.537B-form double helix,double helix,structureenzyme,oxidoreductase,polymerase,transferase
21TKD|1|T+ 1TKD|1|PT7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation siteX-RAY DIFFRACTION2.4935B-form double helix,double helix,structureenzyme,oxidoreductase,polymerase,transferase
31TK0|1|T+ 1TK0|1|PT7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion siteX-RAY DIFFRACTION2.329double helix,structureenzyme,oxidoreductase,polymerase,transferase
41SKR|1|T+ 1SKR|1|PT7 DNA Polymerase Complexed To DNA Primer/Template and ddATPX-RAY DIFFRACTION2.424B-form double helix,double helix,structureenzyme,oxidoreductase,polymerase,transferase
51TK5|1|T+ 1TK5|1|PT7 DNA polymerase binary complex with 8 oxo guanosine in the templating strandX-RAY DIFFRACTION2.224B-form double helix,double helix,structureenzyme,oxidoreductase,polymerase,transferase
61X9M|1|D+ 1X9M|1|CT7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNAX-RAY DIFFRACTION2.122B-form double helix,double helix,structureenzyme,oxidoreductase,polymerase,transferase
71X9W|1|D+ 1X9W|1|CT7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.X-RAY DIFFRACTION2.322double helix,structureenzyme,oxidoreductase,polymerase,transferase
83H0D|1|C+ 3H0D|1|DCrystal structure of CtsR in complex with a 26bp DNA duplexX-RAY DIFFRACTION2.452B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
96PAX|1|B+ 6PAX|1|CCRYSTAL STRUCTURE OF THE HUMAN PAX-6 PAIRED DOMAIN-DNA COMPLEX REVEALS A GENERAL MODEL FOR PAX PROTEIN-DNA INTERACTIONSX-RAY DIFFRACTION2.552B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
101H8A|1|D+ 1H8A|1|ECRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3X-RAY DIFFRACTION2.2352B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
111H89|1|D+ 1H89|1|ECRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2X-RAY DIFFRACTION2.4552B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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