#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
11NK0|1|C+ 1NK0|1|B (rep)DNA PRIMER STRAND, DNA TEMPLATE STRANDADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.7232004-03-30
23MFI|1|T+ 3MFI|1|P5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3', 5'-D(*TP*AP*AP*(TTD)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3'DNA Polymerase Eta in Complex With a cis-syn Thymidine DimerX-ray diffraction1.76242010-06-23
31NKC|1|B+ 1NKC|1|CDNA PRIMER STRAND, DNA TEMPLATE STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.X-ray diffraction1.8302004-03-30
41U4B|1|C+ 1U4B|1|BDNA primer strand, DNA template strand with 8-oxoguanineExtension of an adenine-8oxoguanine mismatchX-ray diffraction1.6232004-09-14
51NK8|1|C+ 1NK8|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.X-ray diffraction1.9232004-03-30
61NJX|1|C+ 1NJX|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDTHYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.65232004-03-30
73FDQ|1|C+ 3FDQ|1|D5'-D(*AP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*AP*AP*T)-3', 5'-D(*TP*AP*TP*TP*TP*TP*TP*TP*TP*AP*AP*AP*AP*AP*A)-3'Recognition of AT-rich DNA binding sites by the MogR RepressorX-ray diffraction1.75302009-06-02
81NK7|1|C+ 1NK7|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDGUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.9202004-03-30
91NK9|1|C+ 1NK9|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.X-ray diffraction1.9242004-03-30
101U45|1|C+ 1U45|1|BDNA primer strand, DNA template strand with 8-oxoguanine8oxoguanine at the pre-insertion site of the polymerase active siteX-ray diffraction2.01202004-09-14
111RH6|1|C+ 1RH6|1|D5'-D(*CP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*G)-3', 5'-D(P*CP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*G)-3'Bacteriophage Lambda Excisionase (Xis)-DNA ComplexX-ray diffraction1.7282004-06-29
121NJW|1|C+ 1NJW|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDGUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction1.9232004-03-30
132HHQ|1|C+ 2HHQ|1|B5'-D(*CP*AP*TP*(6OG)P*CP*GP*AP*GP*TP*CP*AP*GP*G)-3', 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*GP*TP*AP*TP*GP*A)-3'O6-methyl-guanine:T pair in the polymerase-10 basepair positionX-ray diffraction1.8282006-12-12
141NKB|1|C+ 1NKB|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.X-ray diffraction2272004-03-30
151U47|1|C+ 1U47|1|BDNA primer strand, DNA template strand with 8-oxoguaninecytosine-8-Oxoguanine base pair at the polymerase active siteX-ray diffraction2222004-09-14
162XHI|1|B+ 2XHI|1|C5'-D(*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Separation-of-function mutants unravel the dual reaction mode of human 8-oxoguanine DNA glycosylaseX-ray diffraction1.55282011-01-26
171U48|1|C+ 1U48|1|BDNA primer strand, DNA template strand with 8-oxoguanineExtension of a cytosine-8-oxoguanine base pairX-ray diffraction2.1232004-09-14
182NOH|1|B+ 2NOH|1|C5'-D(*GP*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Structure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-ray diffraction2.01292006-11-21
192VS8|1|D+ 2VS8|1|B+ 2VS8|1|C+ 2VS8|1|E5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3'Desulfurococcus mucosusThe crystal structure of I-DmoI in complex with DNA and MnX-ray diffraction2.1502008-11-11
202VS8|1|I+ 2VS8|1|H5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3'Desulfurococcus mucosusThe crystal structure of I-DmoI in complex with DNA and MnX-ray diffraction2.102008-11-11
212VS8|1|N+ 2VS8|1|L+ 2VS8|1|M+ 2VS8|1|O5'-D(*CP*CP*GP*GP*CP*AP*AP* GP*GP*CP)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP *CP*TP*TP*AP*C)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP *GP*TP*AP*A)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP* DGP*DCP*DGP)-3'Desulfurococcus mucosusThe crystal structure of I-DmoI in complex with DNA and MnX-ray diffraction2.1502008-11-11
221XC9|1|C+ 1XC9|1|BDNA primer strand, DNA template strand with benzo[a]pyrene adductStructure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replicationX-ray diffraction1.9222004-12-14
231NK6|1|C+ 1NK6|1|BDNA PRIMER STRAND, DNA TEMPLATE STRANDCYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-ray diffraction2.1182004-03-30
241U49|1|C+ 1U49|1|BDNA primer strand, DNA template strand with 8-oxoguanineAdenine-8oxoguanine mismatch at the polymerase active siteX-ray diffraction2.15222004-09-14
251LWY|1|D+ 1LWY|1|E5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanineX-ray diffraction2.01292003-02-25
263IAG|1|A+ 3IAG|1|B5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3'CSL (RBP-Jk) bound to HES-1 nonconsensus siteX-ray diffraction2302009-11-10
271LWW|1|D+ 1LWW|1|E5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanineX-ray diffraction2.1292003-02-25
281M3Q|1|B+ 1M3Q|1|C5'-D(*GP*CP*GP*TP*CP*CP*AP*(DRZ)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Crystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanineX-ray diffraction1.9302004-02-17
292NOE|1|B+ 2NOE|1|C5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Structure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-ray diffraction2.2262006-11-21
302IMW|1|T+ 2IMW|1|S5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(*TP*AP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA PolymeraseX-ray diffraction2.05282007-01-16
311LWV|1|D+ 1LWV|1|E5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanineX-ray diffraction2.3292003-02-25
322NOF|1|B+ 2NOF|1|C5'-D(*GP*CP*GP*TP*C*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Structure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNAX-ray diffraction2.35162006-11-21
332NOI|1|B+ 2NOI|1|C5'-D(*GP*CP*GP*TP*C*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Structure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNAX-ray diffraction2.35192006-11-21
343BRG|1|A+ 3BRG|1|BDNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3')CSL (RBP-Jk) bound to DNAX-ray diffraction2.2302008-04-01
353L4J|1|C+ 3L4J|1|BDNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3')Topoisomerase II-DNA cleavage complex, apoX-ray diffraction2.48262010-05-26
363L4J|1|E+ 3L4J|1|DDNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*TP*GP*AP*CP*GP*AP*TP*)-3')Topoisomerase II-DNA cleavage complex, apoX-ray diffraction2.48252010-05-26
372RDJ|1|F+ 2RDJ|1|EDNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3'), DNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3')Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsX-ray diffraction2.2292008-06-24
383BRD|1|B+ 3BRD|1|CDNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3')CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121X-ray diffraction2.21302008-04-01
391M3H|1|B+ 1M3H|1|C+ 1M3H|1|D5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3'Crystal Structure of Hogg1 D268E Mutant with Product OligonucleotideX-ray diffraction2.05302004-04-20
402NOZ|1|B+ 2NOZ|1|C5'-D(*G*CP*GP*TP*CP*CP*AP*(G42)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'Structure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNAX-ray diffraction2.43232006-11-21
411HU0|1|D+ 1HU0|1|E5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEXX-ray diffraction2.35292003-02-25
421K79|1|B+ 1K79|1|CDNA (5'-D(*CP*AP*CP*AP*TP*TP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*AP*AP*TP*GP*T)-3')Ets-1(331-440)+GGAA duplexX-ray diffraction2.4302002-01-04
431K79|1|E+ 1K79|1|FDNA (5'-D(*CP*AP*CP*AP*TP*TP*TP*CP*CP*GP*GP*CP*AP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*TP*GP*CP*CP*GP*GP*AP*AP*AP*TP*GP*T)-3')Ets-1(331-440)+GGAA duplexX-ray diffraction2.4302002-01-04
442CGP|1|C+ 2CGP|1|BDNA (5'-D(*AP*TP*TP*AP*AP*TP*GP*TP*GP*AP*CP*AP*TP*AP*T)-3'), DNA (5'-D(*GP*TP*CP*AP*CP*AP*TP*TP*AP*AP*T)-3')CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEX-ray diffraction2.2261998-02-04
452H1K|1|C+ 2H1K|1|D15-mer DNACrystal structure of the Pdx1 homeodomain in complex with DNAX-ray diffraction2.42302007-03-20
462H1K|1|E+ 2H1K|1|F15-mer DNACrystal structure of the Pdx1 homeodomain in complex with DNAX-ray diffraction2.42302007-03-20
471QPI|1|MDNA (5'-D(*CP*CP*TP*AP*TP*CP*AP*AP*TP*GP*AP*TP*AP*GP*A)-3')CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-ray diffraction2.502000-02-28
481QPI|1|NDNA (5'-D(*TP*CP*TP*AP*TP*CP*AP*TP*TP*GP*AP*TP*AP*GP*G)-3')CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-ray diffraction2.502000-02-28
491SKN|1|A+ 1SKN|1|BDNA (5'-D(*CP*AP*GP*GP*GP*AP*TP*GP*AP*CP*AP*TP*TP*GP*T)-3'), DNA (5'-D(*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*TP*CP*CP*C)-3')THE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIFX-ray diffraction2.5301998-06-24
503BRF|1|B+ 3BRF|1|CDNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3'), DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3')CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221X-ray diffraction2.47302008-04-01
511DSZ|1|C+ 1DSZ|1|DDNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3')STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1X-ray diffraction1.7302000-07-10
521N39|1|B+ 1N39|1|CDNA complement strand, DNA inhibitor strandStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-ray diffraction2.2302003-03-04
531N3A|1|B+ 1N3A|1|CDNA complement strand, DNA inhibitor strandStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-ray diffraction2.2302003-03-04
541OZJ|1|C+ 1OZJ|1|DSmad binding elementCrystal structure of Smad3-MH1 bound to DNA at 2.4 A resolutionX-ray diffraction2.4302004-03-23
551B8I|1|C+ 1B8I|1|DDNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3')STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEXX-ray diffraction2.4301999-04-12
569ANT|1|C+ 9ANT|1|DDNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3')ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-ray diffraction2.4301998-10-14
579ANT|1|E+ 9ANT|1|FDNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*CP*AP*TP*TP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3')ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-ray diffraction2.4301998-10-14
581PDN|1|A+ 1PDN|1|BDNA (5'-D(*AP*AP*CP*GP*TP*CP*AP*CP*GP*GP*TP*TP*GP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*AP*AP*CP*CP*GP*TP*GP*AP*CP*G)-3')CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONSX-ray diffraction2.5301995-07-31

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
13L4J|1|C+ 3L4J|1|BTopoisomerase II-DNA cleavage complex, apoX-RAY DIFFRACTION2.4826double helix,structureenzyme,isomerase
23L4J|1|E+ 3L4J|1|DTopoisomerase II-DNA cleavage complex, apoX-RAY DIFFRACTION2.4825double helix,structureenzyme,isomerase
32NOF|1|B+ 2NOF|1|CStructure of Q315F human 8-oxoguanine glycosylase proximal crosslink to 8-oxoguanine DNAX-RAY DIFFRACTION2.3516B-form double helix,double helix,structureenzyme,hydrolase
42NOI|1|B+ 2NOI|1|CStructure of G42A human 8-oxoguanine glycosylase crosslinked to undamaged G-containing DNAX-RAY DIFFRACTION2.3519B-form double helix,double helix,structureenzyme,hydrolase
52XHI|1|B+ 2XHI|1|CSeparation-of-function mutants unravel the dual reaction mode of human 8-oxoguanine DNA glycosylaseX-RAY DIFFRACTION1.5528B-form double helix,double helix,structureenzyme,hydrolase
62NOH|1|B+ 2NOH|1|CStructure of catalytically inactive Q315A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-RAY DIFFRACTION2.0129B-form double helix,double helix,structureenzyme,hydrolase
72NOZ|1|B+ 2NOZ|1|CStructure of Q315F human 8-oxoguanine glycosylase distal crosslink to 8-oxoguanine DNAX-RAY DIFFRACTION2.4323B-form double helix,double helix,structureenzyme,hydrolase
81M3H|1|B+ 1M3H|1|C+ 1M3H|1|DCrystal Structure of Hogg1 D268E Mutant with Product OligonucleotideX-RAY DIFFRACTION2.0530B-form double helix,double helix,structureenzyme,hydrolase
91N39|1|B+ 1N39|1|CStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-RAY DIFFRACTION2.230B-form double helix,double helix,structureenzyme,hydrolase
101N3A|1|B+ 1N3A|1|CStructural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylaseX-RAY DIFFRACTION2.230B-form double helix,double helix,structureenzyme,hydrolase
111M3Q|1|B+ 1M3Q|1|CCrystal Structure of hogg1 D268E Mutant with Base-Excised DNA and 8-aminoguanineX-RAY DIFFRACTION1.930B-form double helix,double helix,structureenzyme,hydrolase
121LWY|1|D+ 1LWY|1|EhOgg1 Borohydride-Trapped Intermediate without 8-oxoguanineX-RAY DIFFRACTION2.0129B-form double helix,double helix,structureenzyme,hydrolase
131HU0|1|D+ 1HU0|1|ECRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEXX-RAY DIFFRACTION2.3529B-form double helix,double helix,structureenzyme,hydrolase
141LWW|1|D+ 1LWW|1|EBorohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanineX-RAY DIFFRACTION2.129B-form double helix,double helix,structureenzyme,hydrolase
151LWV|1|D+ 1LWV|1|EBorohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanineX-RAY DIFFRACTION2.329B-form double helix,double helix,structureenzyme,hydrolase
162NOE|1|B+ 2NOE|1|CStructure of catalytically inactive G42A human 8-oxoguanine glycosylase complexed to 8-oxoguanine DNAX-RAY DIFFRACTION2.226double helix,structureenzyme,hydrolase
171U4B|1|C+ 1U4B|1|BExtension of an adenine-8oxoguanine mismatchX-RAY DIFFRACTION1.623enzyme,polymerase,transferase
181NKB|1|C+ 1NKB|1|BA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER THREE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, AND DTTP.X-RAY DIFFRACTION227B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
191XC9|1|C+ 1XC9|1|BStructure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replicationX-RAY DIFFRACTION1.922B-form double helix,double helix,structureenzyme,polymerase,transferase
202IMW|1|T+ 2IMW|1|SMechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA PolymeraseX-RAY DIFFRACTION2.0528B-form double helix,double helix,structureenzyme,polymerase,transferase
211U47|1|C+ 1U47|1|Bcytosine-8-Oxoguanine base pair at the polymerase active siteX-RAY DIFFRACTION222B-form double helix,double helix,structureenzyme,polymerase,transferase
221U48|1|C+ 1U48|1|BExtension of a cytosine-8-oxoguanine base pairX-RAY DIFFRACTION2.123B-form double helix,double helix,structureenzyme,polymerase,transferase
231NJX|1|C+ 1NJX|1|BTHYMINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.6523B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
241NJW|1|C+ 1NJW|1|BGUANINE-THYMINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.923B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
252HHQ|1|C+ 2HHQ|1|BO6-methyl-guanine:T pair in the polymerase-10 basepair positionX-RAY DIFFRACTION1.828B-form double helix,double helix,structureenzyme,polymerase,transferase
263BRF|1|B+ 3BRF|1|CCSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221X-RAY DIFFRACTION2.4730B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,cell signaling,immunoglobulin (Ig) fold,regulatory,transcription
273BRD|1|B+ 3BRD|1|CCSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121X-RAY DIFFRACTION2.2130B-form double helix,double helix,structureDNA-binding transcription factor (TF),cell signaling,immunoglobulin (Ig) fold,regulatory,rel homology,transcription
281B8I|1|C+ 1B8I|1|DSTRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.430B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
291QPI|1|NCRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-RAY DIFFRACTION2.50B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription
301QPI|1|MCRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEXX-RAY DIFFRACTION2.50B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,tetR family,transcription
311PDN|1|A+ 1PDN|1|BCRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS RESOLUTION REVEALS STRUCTURAL BASIS FOR PAX DEVELOPMENTAL MUTATIONSX-RAY DIFFRACTION2.530B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
329ANT|1|E+ 9ANT|1|FANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-RAY DIFFRACTION2.430B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
339ANT|1|C+ 9ANT|1|DANTENNAPEDIA HOMEODOMAIN-DNA COMPLEXX-RAY DIFFRACTION2.430B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
342H1K|1|C+ 2H1K|1|DCrystal structure of the Pdx1 homeodomain in complex with DNAX-RAY DIFFRACTION2.4230B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
351RH6|1|C+ 1RH6|1|DBacteriophage Lambda Excisionase (Xis)-DNA ComplexX-RAY DIFFRACTION1.728B-form double helix,double helix,structureenzyme,recombinase
362VS8|1|D+ 2VS8|1|B+ 2VS8|1|C+ 2VS8|1|EThe crystal structure of I-DmoI in complex with DNA and MnX-RAY DIFFRACTION2.150B-form double helix,double helix,structureenzyme,hydrolase,nuclease
372VS8|1|N+ 2VS8|1|L+ 2VS8|1|M+ 2VS8|1|OThe crystal structure of I-DmoI in complex with DNA and MnX-RAY DIFFRACTION2.150B-form double helix,double helix,structureenzyme,hydrolase,nuclease
382VS8|1|I+ 2VS8|1|HThe crystal structure of I-DmoI in complex with DNA and MnX-RAY DIFFRACTION2.10B-form double helix,double helix,structureenzyme,hydrolase,nuclease
391K79|1|B+ 1K79|1|CEts-1(331-440)+GGAA duplexX-RAY DIFFRACTION2.430B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
401NK9|1|C+ 1NK9|1|BA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER TWO ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP AND DGTP.X-RAY DIFFRACTION1.924double helix,feature,mispair,structureenzyme,polymerase,transferase
411K79|1|E+ 1K79|1|FEts-1(331-440)+GGAA duplexX-RAY DIFFRACTION2.430B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
423FDQ|1|C+ 3FDQ|1|DRecognition of AT-rich DNA binding sites by the MogR RepressorX-RAY DIFFRACTION1.7530B-form double helix,double helix,structureregulatory,transcription
432CGP|1|C+ 2CGP|1|BCATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEX-RAY DIFFRACTION2.226double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
442H1K|1|E+ 2H1K|1|FCrystal structure of the Pdx1 homeodomain in complex with DNAX-RAY DIFFRACTION2.4230B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
451NK8|1|C+ 1NK8|1|BA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.X-RAY DIFFRACTION1.923B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
461NK0|1|C+ 1NK0|1|BADENINE-GUANINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.723B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
471NK6|1|C+ 1NK6|1|BCYTOSINE-CYTOSINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION2.118B-form double helix,double helix,structureenzyme,polymerase,transferase
483MFI|1|T+ 3MFI|1|PDNA Polymerase Eta in Complex With a cis-syn Thymidine DimerX-RAY DIFFRACTION1.7624B-form double helix,double helix,structureenzyme,polymerase,transferase
491NK7|1|C+ 1NK7|1|BGUANINE-ADENINE MISMATCH AT THE POLYMERASE ACTIVE SITEX-RAY DIFFRACTION1.920B-form double helix,double helix,structureenzyme,polymerase,transferase
501U45|1|C+ 1U45|1|B8oxoguanine at the pre-insertion site of the polymerase active siteX-RAY DIFFRACTION2.0120B-form double helix,double helix,structureenzyme,polymerase,transferase
511U49|1|C+ 1U49|1|BAdenine-8oxoguanine mismatch at the polymerase active siteX-RAY DIFFRACTION2.1522enzyme,polymerase,transferase
521SKN|1|A+ 1SKN|1|BTHE BINDING DOMAIN OF SKN-1 IN COMPLEX WITH DNA: A NEW DNA-BINDING MOTIFX-RAY DIFFRACTION2.530B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
531NKC|1|B+ 1NKC|1|CA BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.X-RAY DIFFRACTION1.830B-form double helix,double helix,feature,mispair,structureenzyme,polymerase,transferase
541OZJ|1|C+ 1OZJ|1|DCrystal structure of Smad3-MH1 bound to DNA at 2.4 A resolutionX-RAY DIFFRACTION2.430B-form double helix,double helix,structureβ-sheet,DNA-binding transcription factor (TF),SMAD-like,regulatory,transcription
551DSZ|1|C+ 1DSZ|1|DSTRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1X-RAY DIFFRACTION1.730B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
563BRG|1|A+ 3BRG|1|BCSL (RBP-Jk) bound to DNAX-RAY DIFFRACTION2.230B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
573IAG|1|A+ 3IAG|1|BCSL (RBP-Jk) bound to HES-1 nonconsensus siteX-RAY DIFFRACTION230B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
582RDJ|1|F+ 2RDJ|1|ESnapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex formsX-RAY DIFFRACTION2.229B-form double helix,double helix,structureenzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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