#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13JXB|1|A+ 3JXB|1|B (rep)5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-ray diffraction1.67402010-01-19
22R1J|1|A+ 2R1J|1|B5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3'Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-ray diffraction1.53402008-04-29
33JXC|1|A+ 3JXC|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-ray diffraction1.9402010-01-19
43JXD|1|A+ 3JXD|1|B5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3'Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-ray diffraction2.1402010-01-19
52HAN|1|C+ 2HAN|1|D5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3'Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-ray diffraction1.95402007-05-22
63MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|GDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.29702010-05-26
73MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LDNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3')Cre recombinase-DNA transition stateX-ray diffraction2.29702010-05-26
82VY1|1|W5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-ray diffraction2.104202008-09-23
92VY2|1|W5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3'Arabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-ray diffraction2.3202008-09-23
101ZG5|1|C+ 1ZG5|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
111ZG5|1|G+ 1ZG5|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
121PUF|1|D+ 1PUF|1|E5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3'Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-ray diffraction1.9402003-09-02
131A6Y|1|C+ 1A6Y|1|DDNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3')REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-ray diffraction2.3401998-10-21
141GA5|1|C+ 1GA5|1|D5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.4402001-11-16
151GA5|1|G+ 1GA5|1|H5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3'CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-ray diffraction2.4402001-11-16
163C2I|1|B+ 3C2I|1|CDNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3'), DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3')The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-ray diffraction2.5402008-05-13
171ZG1|1|C+ 1ZG1|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
181ZG1|1|G+ 1ZG1|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'NarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-ray diffraction2.3402005-11-22
193COQ|1|D+ 3COQ|1|EDNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3')synthetic constructStructural Basis for Dimerization in DNA Recognition by Gal4X-ray diffraction2.4402008-07-01
201LE8|1|C+ 1LE8|1|D5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3'Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-ray diffraction2.3402002-05-03
211L3L|1|E+ 1L3L|1|G5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.66402002-07-03
221L3L|1|F+ 1L3L|1|H5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3'Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-ray diffraction1.66402002-07-03
231LMB|1|1+ 1LMB|1|2DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3')REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEXX-ray diffraction1.8401991-11-05
241LLI|1|D+ 1LLI|1|EDNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3')THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKINGX-ray diffraction2.1401994-08-31
251JE8|1|C+ 1JE8|1|D5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.12402002-09-27
261JE8|1|G+ 1JE8|1|H5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-ray diffraction2.12402002-09-27
271JNM|1|C+ 1JNM|1|D5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3'Crystal Structure of the Jun/CRE ComplexX-ray diffraction2.2402003-06-03
281B72|1|D+ 1B72|1|EDNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3')PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-ray diffraction2.35401999-02-19
292RAM|1|C+ 2RAM|1|DDNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3')A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-ray diffraction2.4401998-05-27
301RPE|1|A+ 1RPE|1|BDNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3')THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.5401994-01-31
313CRO|1|A+ 3CRO|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-ray diffraction2.5401991-10-15
321PER|1|A+ 1PER|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3')THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-ray diffraction2.5401994-01-31
331HWT|1|A+ 1HWT|1|BDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.5401999-11-10
342HAP|1|A+ 2HAP|1|BDNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3')STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-ray diffraction2.5401999-11-10
352OR1|1|A+ 2OR1|1|BDNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3')RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-ray diffraction2.5401989-09-05
361UBD|1|A+ 1UBD|1|BDNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3')CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-ray diffraction2.5401996-12-23
371HWT|1|E+ 1HWT|1|FDNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3')STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-ray diffraction2.5401999-11-10

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
11LE8|1|C+ 1LE8|1|DCrystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA ComplexX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
21JE8|1|C+ 1JE8|1|DTwo-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1240B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
31JE8|1|G+ 1JE8|1|HTwo-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity SiteX-RAY DIFFRACTION2.1240B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
41ZG5|1|G+ 1ZG5|1|HNarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
51ZG5|1|C+ 1ZG5|1|DNarL complexed to narG-89 promoter palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
61ZG1|1|C+ 1ZG1|1|DNarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
71ZG1|1|G+ 1ZG1|1|HNarL complexed to nirB promoter non-palindromic tail-to-tail DNA siteX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
81L3L|1|E+ 1L3L|1|GCrystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
91L3L|1|F+ 1L3L|1|HCrystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNAX-RAY DIFFRACTION1.6640B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
102R1J|1|A+ 2R1J|1|BCrystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9TX-RAY DIFFRACTION1.5340B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
113JXD|1|A+ 3JXD|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+X-RAY DIFFRACTION2.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
123JXC|1|A+ 3JXC|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+X-RAY DIFFRACTION1.940B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
133JXB|1|A+ 3JXB|1|BCrystal structure of the P22 c2 repressor protein in complex with synthetic operator 9CX-RAY DIFFRACTION1.6740B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
141LLI|1|D+ 1LLI|1|ETHE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKINGX-RAY DIFFRACTION2.140B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
151LMB|1|1+ 1LMB|1|2REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEXX-RAY DIFFRACTION1.840B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
161PER|1|A+ 1PER|1|BTHE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITESX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
172OR1|1|A+ 2OR1|1|BRECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
181RPE|1|A+ 1RPE|1|BTHE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
193CRO|1|A+ 3CRO|1|BTHE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTIONX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
202HAN|1|C+ 2HAN|1|DStructural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoterX-RAY DIFFRACTION1.9540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
211JNM|1|C+ 1JNM|1|DCrystal Structure of the Jun/CRE ComplexX-RAY DIFFRACTION2.240B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
223COQ|1|D+ 3COQ|1|EStructural Basis for Dimerization in DNA Recognition by Gal4X-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
231GA5|1|G+ 1GA5|1|HCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
241GA5|1|C+ 1GA5|1|DCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENTX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
251A6Y|1|C+ 1A6Y|1|DREVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEXX-RAY DIFFRACTION2.340B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
261UBD|1|A+ 1UBD|1|BCO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENTX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
271B72|1|D+ 1B72|1|EPBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.3540B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
283C2I|1|B+ 3C2I|1|CThe Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNFX-RAY DIFFRACTION2.540B-form double helix,double helix,structurechromatin,structural
292VY2|1|WStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoterX-RAY DIFFRACTION2.320B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
302VY1|1|WStructure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoterX-RAY DIFFRACTION2.10420B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
312RAM|1|C+ 2RAM|1|DA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMERX-RAY DIFFRACTION2.440B-form double helix,double helix,structureDNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription
321PUF|1|D+ 1PUF|1|ECrystal Structure of HoxA9 and Pbx1 homeodomains bound to DNAX-RAY DIFFRACTION1.940B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
331HWT|1|A+ 1HWT|1|BSTRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
341HWT|1|E+ 1HWT|1|FSTRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEINX-RAY DIFFRACTION2.540B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
352HAP|1|A+ 2HAP|1|BSTRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATIONX-RAY DIFFRACTION2.540double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription
363MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|GCre recombinase-DNA transition stateX-RAY DIFFRACTION2.2970enzyme,recombinase
373MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|LCre recombinase-DNA transition stateX-RAY DIFFRACTION2.2970enzyme,recombinase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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