Equivalence class DNA_20.0_31290.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 476D|1|A+ 476D|1|B (rep) | 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-ray diffraction | 1.3 | 22 | 1999-07-19 | ||||
| 2 | 3NDH|1|C+ 3NDH|1|D | DNA (5'-D(*C*CP*AP*TP*CP*GP*CP*GP*TP*AP*C)-3'), DNA (5'-D(*G*GP*TP*AP*CP*GP*CP*GP*AP*TP*G)-3') | Restriction endonuclease in complex with substrate DNA | X-ray diffraction | 1.3 | 20 | 2010-07-28 | ||||
| 3 | 2OAA|1|C+ 2OAA|1|D | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 21 | 2007-02-20 | ||||
| 4 | 2OAA|1|E+ 2OAA|1|F | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3' | Restriction endonuclease MvaI-cognate DNA substrate complex | X-ray diffraction | 1.5 | 22 | 2007-02-20 | ||||
| 5 | 2ODI|1|C+ 2ODI|1|D | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 22 | 2007-03-20 | ||||
| 6 | 2ODI|1|E+ 2ODI|1|F | 5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3', 5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3' | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-ray diffraction | 1.45 | 22 | 2007-03-20 | ||||
| 7 | 3BM3|1|C+ 3BM3|1|D | DNA (5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3') | Restriction endonuclease PspGI-substrate DNA complex | X-ray diffraction | 1.7 | 22 | 2008-09-16 | ||||
| 8 | 3GOX|1|C+ 3GOX|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-ray diffraction | 1.5 | 20 | 2009-04-28 | ||||
| 9 | 3MR3|1|T+ 3MR3|1|P | DNA (5'-D(*CP*AP*(TTD)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*TP*CP*AP*T)-3') | Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) | X-ray diffraction | 1.75 | 20 | 2010-06-30 | ||||
| 10 | 2AVH|1|A | 5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3' | G4T3G4 dimeric quadruplex structure | X-ray diffraction | 1.5 | 11 | 2006-03-28 | ||||
| 11 | 1NR8|1|B | H-((GPN)*(TPN)*(APN)*(GPN)*(A66)*(T66)*(C66)*(APN)*(CPN)*(TPN))-NH2 | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-ray diffraction | 1.66 | 0 | 2003-10-28 | ||||
| 12 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | 5'-D(*AP*TP*AP*TP*CP*T)-3', 5'-D(*AP*TP*CP*TP*GP*AP*AP*GP*TP*AP*T)-3', 5'-D(P*(3DR)P*AP*GP*AP*T)-3' | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-ray diffraction | 1.45 | 22 | 2007-11-13 | ||||
| 13 | 2Q10|1|C+ 2Q10|1|D | DNA (5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3'), DNA (5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3') | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-ray diffraction | 1.75 | 22 | 2007-06-05 | ||||
| 14 | 2Q10|1|E+ 2Q10|1|F | DNA (5'-D(*AP*AP*CP*CP*CP*GP*GP*AP*GP*AP*C)-3'), DNA (5'-D(*CP*TP*CP*CP*GP*GP*GP*TP*TP*GP*T)-3') | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-ray diffraction | 1.75 | 22 | 2007-06-05 | ||||
| 15 | 3FC3|1|C+ 3FC3|1|D | 5'-(*DCP*DTP*DCP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DA)-3', 5'-(*DTP*DAP*DCP*DGP*DTP*DCP*DGP*DAP*DGP*DTP*DC)-3' | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I | X-ray diffraction | 1.75 | 18 | 2009-03-31 | ||||
| 16 | 1TEZ|1|I+ 1TEZ|1|J | 5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3', 5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3' | synthetic construct | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 20 | 2004-12-14 | |||
| 17 | 1TEZ|1|K+ 1TEZ|1|L | 5'-D(*AP*TP*CP*GP*GP*CP*T*(TCP)P*CP*GP*C)-3', 5'-D(P*CP*GP*AP*AP*GP*CP*CP*GP*A)-3' | synthetic construct | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-ray diffraction | 1.8 | 20 | 2004-12-14 | |||
| 18 | 2PFN|1|T+ 2PFN|1|P+ 2PFN|1|D | Downstream Primer, Primer, Template | Na in the active site of DNA Polymerase lambda | X-ray diffraction | 1.9 | 21 | 2007-05-15 | ||||
| 19 | 2X6V|1|C+ 2X6V|1|D | 5'-D(*TP*AP*AP*GP*GP*TP*GP*TP*GP*AP*GP)-3', 5'-D(*TP*CP*TP*CP*AP*CP*AP*CP*CP*TP*TP)-3' | synthetic construct | Crystal structure of human TBX5 in the DNA-bound and DNA-free form | X-ray diffraction | 2.2 | 22 | 2010-04-28 | |||
| 20 | 3PNC|1|C+ 3PNC|1|B+ 3PNC|1|D | 5'-D(*CP*AP*GP*TP*AP*G)-3', 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3', 5'-D(*GP*CP*CP*G)-3' | Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site | X-ray diffraction | 2 | 21 | 2011-02-02 | ||||
| 21 | 1ORN|1|B+ 1ORN|1|C | 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*T*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3' | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex | X-ray diffraction | 1.7 | 20 | 2003-07-15 | ||||
| 22 | 2HRI|1|A | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3' | A parallel stranded human telomeric quadruplex in complex with the porphyrin TMPyP4 | X-ray diffraction | 2.09 | 11 | 2007-05-08 | ||||
| 23 | 2HRI|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3' | A parallel stranded human telomeric quadruplex in complex with the porphyrin TMPyP4 | X-ray diffraction | 2.09 | 11 | 2007-05-08 | ||||
| 24 | 2XSD|1|A+ 2XSD|1|B | 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3', 5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3' | Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA | X-ray diffraction | 2.049 | 22 | 2010-10-20 | ||||
| 25 | 2PFO|1|T+ 2PFO|1|P+ 2PFO|1|D | Downstream Primer, Primer, Template | DNA Polymerase lambda in complex with DNA and dUPNPP | X-ray diffraction | 2 | 21 | 2007-05-15 | ||||
| 26 | 2I0Q|1|D | 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3' | Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins | X-ray diffraction | 1.91 | 11 | 2006-08-22 | ||||
| 27 | 1XSN|1|T+ 1XSN|1|P+ 1XSN|1|D | 5'-D(*CP*AP*GP*TP*AP*(2DT))-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP | X-ray diffraction | 1.95 | 21 | 2005-01-18 | ||||
| 28 | 2PFP|1|T+ 2PFP|1|P+ 2PFP|1|D | Downstream Primer, Primer, Template | DNA Polymerase lambda in complex with DNA and dCTP | X-ray diffraction | 2.1 | 21 | 2007-05-15 | ||||
| 29 | 1U1Q|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(OIP)*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTA(DI)GG); A Human Telomeric Repeat Containing Inosine | X-ray diffraction | 1.8 | 11 | 2004-09-21 | ||||
| 30 | 1U1N|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(PRN)P*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTA (PRN)GG); A Human Telomeric Repeat Containing Nebularine | X-ray diffraction | 2.1 | 11 | 2004-09-21 | ||||
| 31 | 3C5G|1|T+ 3C5G|1|P+ 3C5G|1|D | DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a ternary complex of the R517K Pol lambda mutant | X-ray diffraction | 2.2 | 21 | 2008-07-29 | ||||
| 32 | 1XSP|1|T+ 1XSP|1|P+ 1XSP|1|D | 5'-D(*CP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*GP*CP*CP*GP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate | X-ray diffraction | 2.2 | 22 | 2005-01-18 | ||||
| 33 | 3C5G|1|U+ 3C5G|1|Q+ 3C5G|1|E | DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*(2DT))-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DAP*DAP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a ternary complex of the R517K Pol lambda mutant | X-ray diffraction | 2.2 | 21 | 2008-07-29 | ||||
| 34 | 3PMN|1|B+ 3PMN|1|C+ 3PMN|1|D | 5'-D(*CP*AP*GP*TP*AP*G)-3', 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3', 5'-D(*GP*CP*CP*G)-3' | ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site | X-ray diffraction | 2.2 | 21 | 2011-02-02 | ||||
| 35 | 1RZT|1|B+ 1RZT|1|C+ 1RZT|1|D | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 20 | 2004-03-02 | ||||
| 36 | 1RZT|1|F+ 1RZT|1|G+ 1RZT|1|H | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 20 | 2004-03-02 | ||||
| 37 | 1RZT|1|J+ 1RZT|1|K+ 1RZT|1|L | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 20 | 2004-03-02 | ||||
| 38 | 1RZT|1|N+ 1RZT|1|O+ 1RZT|1|P | 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-ray diffraction | 2.1 | 20 | 2004-03-02 | ||||
| 39 | 2P0J|1|C+ 2P0J|1|D | 5'-D(*AP*TP*GP*AP*AP*TP*CP*CP*AP*TP*A)-3', 5'-D(*TP*AP*TP*GP*GP*AP*TP*TP*CP*AP*T)-3' | Structure of restriction endonuclease BstYI bound to non-cognate DNA | X-ray diffraction | 2.1 | 22 | 2007-05-01 | ||||
| 40 | 3MDA|1|T+ 3MDA|1|P+ 3MDA|1|D | DNA (5'-D(*CP*AP*GP*TP*AP*CP*(CAR))-3'), DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | DNA polymerase lambda in complex with araC | X-ray diffraction | 2.031 | 22 | 2010-04-28 | ||||
| 41 | 1PO6|1|B | 5'-D(*T*AP*GP*GP*(6MI)P*TP*TP*AP*GP*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) | X-ray diffraction | 2.1 | 11 | 2003-11-11 | ||||
| 42 | 3MQY|1|D+ 3MQY|1|F+ 3MQY|1|C+ 3MQY|1|E | DNA (5'-D(*GP*AP*GP*TP*CP*CP*A)-3'), DNA (5'-D(P*CP*CP*GP*GP*TP*GP*GP*AP*CP*TP*C)-3') | SgrAI with cleaved DNA and Magnesium bound | X-ray diffraction | 2 | 36 | 2010-11-24 | ||||
| 43 | 1U1R|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*(2PR)P*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(2PR)G); A Human Telomeric Repeat Containing 2-aminopurine | X-ray diffraction | 1.8 | 11 | 2004-09-21 | ||||
| 44 | 3MDC|1|T+ 3MDC|1|P+ 3MDC|1|D | DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | DNA polymerase lambda in complex with dFdCTP | X-ray diffraction | 1.999 | 21 | 2010-04-28 | ||||
| 45 | 1U1K|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*(7DA)P*GP*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTT 7DA GGG); A Human Telomeric Repeat Containing 7-deaza-adenine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 46 | 1U1O|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*(OIP)*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(DI)G); A Human Telomeric Repeat Containing Inosine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 47 | 2W36|1|C+ 2W36|1|D | 5'-D(*CP*GP*AP*TP*CP*TP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*BRUP*AP*CP*IP*GP*AP*BRUP*CP*GP)-3' | synthetic construct | Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair | X-ray diffraction | 2.1 | 16 | 2009-01-20 | |||
| 48 | 2W36|1|E+ 2W36|1|F | 5'-D(*CP*GP*AP*TP*CP*TP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*BRUP*AP*CP*IP*GP*AP*BRUP*CP*GP)-3' | synthetic construct | Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair | X-ray diffraction | 2.1 | 16 | 2009-01-20 | |||
| 49 | 3G6Y|1|T+ 3G6Y|1|P | Primer DNA strand, Template DNA strand | Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position | X-ray diffraction | 2.1 | 15 | 2009-05-12 | ||||
| 50 | 1XSL|1|B+ 1XSL|1|C+ 1XSL|1|D | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 21 | 2005-01-18 | ||||
| 51 | 1XSL|1|F+ 1XSL|1|G+ 1XSL|1|H | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 21 | 2005-01-18 | ||||
| 52 | 1XSL|1|J+ 1XSL|1|K+ 1XSL|1|L | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 21 | 2005-01-18 | ||||
| 53 | 1XSL|1|N+ 1XSL|1|O+ 1XSL|1|P | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-ray diffraction | 2.3 | 21 | 2005-01-18 | ||||
| 54 | 1U1M|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*(7GU)P*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTTA 7GU GG); A Human Telomeric Repeat Containing 7-deaza-guanine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 55 | 3C5F|1|T+ 3C5F|1|P+ 3C5F|1|D | DNA (5'-D(*DCP*DAP*DGP*DTP*DAP*DC)-3'), DNA (5'-D(*DCP*DGP*DGP*DCP*DCP*DGP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a binary complex of the R517A Pol lambda mutant | X-ray diffraction | 2.25 | 0 | 2008-09-02 | ||||
| 56 | 3C5F|1|U+ 3C5F|1|E | DNA (5'-D(*DCP*DGP*DGP*DCP*DCP*DGP*DTP*DAP*DCP*DTP*DG)-3'), DNA (5'-D(P*DGP*DCP*DCP*DG)-3') | Structure of a binary complex of the R517A Pol lambda mutant | X-ray diffraction | 2.25 | 0 | 2008-09-02 | ||||
| 57 | 1U1L|1|B | 5'-D(*TP*AP*GP*GP*GP*TP*TP*(PRN)P*GP*GP*G)-3' | Crystal Structure of UP1 Complexed With d(TTAGGGTT PRN GGG); A Human Telomeric Repeat Containing nebularine | X-ray diffraction | 2 | 11 | 2004-09-21 | ||||
| 58 | 1ORP|1|B+ 1ORP|1|C | 5'-D(*AP*AP*GP*AP*CP*AP*TP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3' | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex | X-ray diffraction | 2.2 | 20 | 2003-07-15 | ||||
| 59 | 3MGH|1|E+ 3MGH|1|F+ 3MGH|1|G | DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | Binary complex of a DNA polymerase lambda loop mutant | X-ray diffraction | 2.4 | 21 | 2010-05-19 | ||||
| 60 | 3MGH|1|T+ 3MGH|1|P+ 3MGH|1|D | DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | Binary complex of a DNA polymerase lambda loop mutant | X-ray diffraction | 2.4 | 21 | 2010-05-19 | ||||
| 61 | 1RRQ|1|B+ 1RRQ|1|C | 5'-D(*TP*GP*TP*CP*CP*AP*AP*GP*TP*CP*T)-3', 5'-D(AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3' | MutY adenine glycosylase in complex with DNA containing an A:oxoG pair | X-ray diffraction | 2.22 | 21 | 2004-02-17 | ||||
| 62 | 1PH5|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*(3DR)P*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GG | X-ray diffraction | 2.3 | 11 | 2003-06-17 | ||||
| 63 | 3KET|1|B+ 3KET|1|C | DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*AP*AP*T)-3'), DNA (5'-D(P*AP*TP*TP*TP*CP*AP*CP*AP*AP*TP*T)-3') | synthetic construct | Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator | X-ray diffraction | 2.4 | 22 | 2010-11-10 | |||
| 64 | 3GXQ|1|D+ 3GXQ|1|C | DNA (5'-D(*AP*CP*AP*TP*GP*AP*CP*AP*TP*G)-3'), DNA (5'-D(*AP*CP*AP*TP*GP*TP*CP*AP*TP*GP*T)-3') | Structure of ArtA and DNA complex | X-ray diffraction | 2.35 | 21 | 2009-10-13 | ||||
| 65 | 2PFQ|1|T+ 2PFQ|1|P+ 2PFQ|1|D | Downstream Primer, Primer, Template | Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal | X-ray diffraction | 2.1 | 22 | 2007-05-15 | ||||
| 66 | 1PH6|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3' | Crystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGG | X-ray diffraction | 2.1 | 11 | 2003-06-17 | ||||
| 67 | 3G6X|1|T+ 3G6X|1|P | Primer DNA strand, Template DNA strand | Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position | X-ray diffraction | 2.08 | 15 | 2009-05-12 | ||||
| 68 | 2Z3X|1|D+ 2Z3X|1|E | 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*A)-3', 5'-D(*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*A)-3' | synthetic construct | Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species | X-ray diffraction | 2.1 | 22 | 2008-02-12 | |||
| 69 | 2XGP|1|T+ 2XGP|1|P | 5'-D(*CP*8FG*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3' | Yeast DNA polymerase eta in complex with C8-2-acetylaminofluorene containing DNA | X-ray diffraction | 2.7 | 20 | 2010-11-03 | ||||
| 70 | 2XGP|1|U+ 2XGP|1|Q | 5'-D(*CP*8FG*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3' | Yeast DNA polymerase eta in complex with C8-2-acetylaminofluorene containing DNA | X-ray diffraction | 2.7 | 19 | 2010-11-03 | ||||
| 71 | 2IHM|1|T+ 2IHM|1|P+ 2IHM|1|D | 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-ray diffraction | 2.4 | 21 | 2006-12-12 | ||||
| 72 | 2IHM|1|U+ 2IHM|1|Q+ 2IHM|1|E | 5'-D(*CP*AP*GP*TP*AP*T)-3', 5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-ray diffraction | 2.4 | 21 | 2006-12-12 | ||||
| 73 | 3MGI|1|T+ 3MGI|1|P+ 3MGI|1|D | DNA, DNA (5'-D(*CP*AP*GP*TP*AP*T)-3'), DNA (5'-D(P*GP*CP*CP*G)-3') | Ternary complex of a DNA polymerase lambda loop mutant | X-ray diffraction | 2.603 | 21 | 2010-05-19 | ||||
| 74 | 1P59|1|B+ 1P59|1|C | 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3', 5'-D(TP*GP*(5IU)P*CP*CP*AP*(3DR)P*GP*(5IU)P*CP*T)-3' | Structure of a non-covalent Endonuclease III-DNA Complex | X-ray diffraction | 2.5 | 21 | 2003-07-15 | ||||
| 75 | 3PML|1|C+ 3PML|1|H+ 3PML|1|D | 5'-D(*CP*AP*GP*TP*AP*C)-3', 5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | crystal structure of a polymerase lambda variant with a dGTP analog opposite a templating T | X-ray diffraction | 2.6 | 21 | 2011-01-26 | ||||
| 76 | 3PML|1|E+ 3PML|1|F+ 3PML|1|G | 5'-D(*CP*AP*GP*TP*AP*C)-3', 5'-D(*CP*GP*GP*CP*TP*GP*TP*AP*CP*TP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | crystal structure of a polymerase lambda variant with a dGTP analog opposite a templating T | X-ray diffraction | 2.6 | 21 | 2011-01-26 | ||||
| 77 | 2XGQ|1|T+ 2XGQ|1|P | 5'-D(*CP*8AG*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3' | Structure of yeast DNA polymerase eta in complex with C8-N-acetyl-2- aminoanthracene containing DNA | X-ray diffraction | 2.7 | 20 | 2010-11-03 | ||||
| 78 | 2XGQ|1|U+ 2XGQ|1|Q | 5'-D(*CP*8AG*CP*TP*CP*AP*TP*CP*CP*AP*C)-3', 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3' | Structure of yeast DNA polymerase eta in complex with C8-N-acetyl-2- aminoanthracene containing DNA | X-ray diffraction | 2.7 | 19 | 2010-11-03 | ||||
| 79 | 2FLP|1|T+ 2FLP|1|P | DNA primer strand, DNA template strand | Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G) | X-ray diffraction | 2.4 | 16 | 2006-12-05 | ||||
| 80 | 2R9L|1|D+ 2R9L|1|C | DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DA)-3'), DNA (5'-D(P*DGP*DCP*DGP*DGP*DC)-3') | synthetic construct | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | X-ray diffraction | 2.4 | 0 | 2008-01-08 | |||
| 81 | 1YQK|1|B+ 1YQK|1|C | 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*G)-3', 5'-D(P*CP*AP*GP*GP*TP*CP*TP*AP*C)-3' | Human 8-oxoguanine glycosylase crosslinked with guanine containing DNA | X-ray diffraction | 2.5 | 20 | 2005-04-05 | ||||
| 82 | 2XO7|1|C+ 2XO7|1|B | 5'-D(*AP*GP*GP*AP*AP*TP*GP*GP*TP*CP*A)-3', 5'-D(*GP*AP*CP*CP*AP*TP*47C*CP*CP*T)-3' | synthetic construct | Crystal structure of a dA:O-allylhydroxylamine-dC basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus | X-ray diffraction | 2.85 | 21 | 2010-09-15 | |||
| 83 | 1RRS|1|B+ 1RRS|1|C | 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3' | MutY adenine glycosylase in complex with DNA containing an abasic site | X-ray diffraction | 2.4 | 20 | 2004-02-17 | ||||
| 84 | 2FLN|1|T+ 2FLN|1|P | DNA primer strand, DNA template strand | binary complex of catalytic core of human DNA polymerase iota with DNA (template A) | X-ray diffraction | 2.5 | 16 | 2006-12-05 | ||||
| 85 | 2FLL|1|T+ 2FLL|1|P | DNA primer strand, DNA template strand | Ternary complex of human DNA polymerase iota with DNA and dTTP | X-ray diffraction | 2.6 | 16 | 2006-12-12 | ||||
| 86 | 2GE5|1|C+ 2GE5|1|D | 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease C-terminal deletion mutant/GATATC/Ca2+ | X-ray diffraction | 2.4 | 22 | 2006-07-04 | ||||
| 87 | 3OH9|1|B+ 3OH9|1|C | 5'-D(*AP*CP*AP*(BRU)P*GP*AP*AP*(BRU)P*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*TP*TP*CP*AP*TP*GP*T)-3' | AlkA Undamaged DNA Complex: Interrogation of a T:A base pair | X-ray diffraction | 2.802 | 22 | 2010-09-15 | ||||
| 88 | 2ZKF|1|C+ 2ZKF|1|D | DNA (5'-D(*DCP*DTP*DAP*DTP*DCP*(5CM)P*DGP*DGP*DTP*DGP*DA)-3'), DNA (5'-D(P*DCP*DAP*DCP*DCP*DGP*DGP*DAP*DTP*DAP*DGP*DA)-3') | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | X-ray diffraction | 2.55 | 22 | 2008-09-09 | ||||
| 89 | 3Q0F|1|B+ 3Q0F|1|C | DNA (5'-D(*CP*TP*GP*AP*GP*GP*AP*GP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*(5CM)P*CP*TP*CP*AP*G)-3') | Crystal structure of SUVH5 SRA- methylated CHH DNA complex | X-ray diffraction | 2.75 | 21 | 2011-02-02 | ||||
| 90 | 2R8J|1|T+ 2R8J|1|P | DNA (5'-D(*DGP*DTP*DGP*DGP*DAP*DTP*DGP*DAP*DG)-3'), DNA (5'-D(P*DGP*DGP*DCP*DTP*DCP*DAP*DTP*DCP*DCP*DAP*DC)-3') | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-ray diffraction | 3.1 | 20 | 2007-12-11 | ||||
| 91 | 2R8J|1|U+ 2R8J|1|Q | DNA (5'-D(*DGP*DTP*DGP*DGP*DAP*DTP*DGP*DAP*DG)-3'), DNA (5'-D(P*DGP*DGP*DCP*DTP*DCP*DAP*DTP*DCP*DCP*DAP*DC)-3') | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-ray diffraction | 3.1 | 20 | 2007-12-11 | ||||
| 92 | 1PH7|1|D | 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*IP*GP*G)-3' | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGG | X-ray diffraction | 2.9 | 11 | 2003-06-17 | ||||
| 93 | 2H8C|1|W+ 2H8C|1|X | 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3' | Structure of RusA D70N in complex with DNA | X-ray diffraction | 3.1 | 22 | 2007-04-24 | ||||
| 94 | 2H8C|1|Y+ 2H8C|1|Z | 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3' | Structure of RusA D70N in complex with DNA | X-ray diffraction | 3.1 | 21 | 2007-04-24 | ||||
| 95 | 3Q0C|1|B+ 3Q0C|1|C | DNA (5'-D(*AP*CP*TP*AP*(5CM)P*GP*TP*AP*GP*TP*T)-3') | Crystal structure of SUVH5 SRA-fully methylated CG DNA complex in space group P6122 | X-ray diffraction | 2.6567 | 21 | 2011-02-02 | ||||
| 96 | 3NM9|1|B+ 3NM9|1|C | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | HMGD(M13A)-DNA complex | X-ray diffraction | 2.85 | 20 | 2010-09-22 | ||||
| 97 | 3NM9|1|E+ 3NM9|1|F | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | HMGD(M13A)-DNA complex | X-ray diffraction | 2.85 | 20 | 2010-09-22 | ||||
| 98 | 3NM9|1|H+ 3NM9|1|I | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | HMGD(M13A)-DNA complex | X-ray diffraction | 2.85 | 20 | 2010-09-22 | ||||
| 99 | 3NM9|1|K+ 3NM9|1|L | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | HMGD(M13A)-DNA complex | X-ray diffraction | 2.85 | 21 | 2010-09-22 | ||||
| 100 | 3NM9|1|N+ 3NM9|1|O | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | HMGD(M13A)-DNA complex | X-ray diffraction | 2.85 | 20 | 2010-09-22 | ||||
| 101 | 2DPU|1|E+ 2DPU|1|D | 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*T)-3', 5'-D(P*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3' | Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA | X-ray diffraction | 3.1 | 21 | 2007-05-15 | ||||
| 102 | 2C9N|1|A+ 2C9N|1|B | 5'-D(*CP*AP*CP*TP*GP*AP*CP*TP*CP*AP *T)-3', 5'-D(*CP*AP*TP*GP*AP*GP*TP*CP*AP*GP *T)-3' | human gammaherpesvirus 4 | Structure of the Epstein-Barr virus ZEBRA protein at approximately 3. 5 Angstrom resolution | X-ray diffraction | 3.3 | 22 | 2006-02-21 | |||
| 103 | 1AAY|1|B+ 1AAY|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZIF268 ZINC FINGER-DNA COMPLEX | X-ray diffraction | 1.6 | 22 | 1997-04-21 | ||||
| 104 | 1A1H|1|B+ 1A1H|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 1.6 | 22 | 1998-06-10 | ||||
| 105 | 1A1I|1|B+ 1A1I|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 1.6 | 22 | 1998-06-17 | ||||
| 106 | 1EON|1|C+ 1EON|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3'), DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ | X-ray diffraction | 1.6 | 22 | 2000-04-04 | ||||
| 107 | 1JK2|1|B+ 1JK2|1|C | 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*CP*CP*CP*AP*CP*GP*C)-3' | Zif268 D20A mutant bound to the GCT DNA site | X-ray diffraction | 1.65 | 22 | 2001-10-19 | ||||
| 108 | 1SUZ|1|C+ 1SUZ|1|D | 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | The structure of K92A EcoRV bound to cognate DNA and Mg2+ | X-ray diffraction | 1.8 | 20 | 2004-04-06 | ||||
| 109 | 1E3O|1|A+ 1E3O|1|B | 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*A)-3', 5'-D(*TP*CP*CP*TP*CP*AP*TP*GP*CP*AP*T)-3' | Homo sapiens | Crystal structure of Oct-1 POU dimer bound to MORE | X-ray diffraction | 1.9 | 22 | 2001-11-10 | |||
| 110 | 1A1K|1|B+ 1A1K|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-ray diffraction | 1.9 | 22 | 1998-06-10 | ||||
| 111 | 1A1G|1|B+ 1A1G|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-ray diffraction | 1.9 | 22 | 1998-06-10 | ||||
| 112 | 1SSP|1|B+ 1SSP|1|A | 5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*(D1P)P*AP*TP*CP*TP*T)-3' | WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA | X-ray diffraction | 1.9 | 21 | 1999-05-06 | ||||
| 113 | 1JK1|1|B+ 1JK1|1|C | 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*G)-3', 5'-D(*TP*CP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3' | Zif268 D20A Mutant Bound to WT DNA Site | X-ray diffraction | 1.9 | 22 | 2001-10-19 | ||||
| 114 | 2B0E|1|C+ 2B0E|1|D | 5'-D(*AP*AP*AP*GP*AP*AP*(DU)P*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease/GAAUTC/Ca2+ | X-ray diffraction | 1.9 | 22 | 2005-09-27 | ||||
| 115 | 1B94|1|C+ 1B94|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM | X-ray diffraction | 1.9 | 22 | 1999-02-26 | ||||
| 116 | 1EO4|1|C+ 1EO4|1|D | DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE | X-ray diffraction | 1.9 | 20 | 2000-04-04 | ||||
| 117 | 1B97|1|C+ 1B97|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 1.9 | 22 | 1999-02-26 | ||||
| 118 | 1A1J|1|B+ 1A1J|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-ray diffraction | 2 | 22 | 1998-06-17 | ||||
| 119 | 1RVA|1|C+ 1RVA|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-ray diffraction | 2 | 22 | 1995-01-26 | ||||
| 120 | 2B0D|1|C+ 2B0D|1|D | 5'-D(*AP*AP*AP*GP*AP*AP*TP*TP*CP*TP*T)-3' | EcoRV Restriction Endonuclease/GAATTC/Ca2+ | X-ray diffraction | 2 | 22 | 2005-09-27 | ||||
| 121 | 1EO3|1|C+ 1EO3|1|D | DNA (5'-D(*CP*AP*AP*GP*AP*(TSP)P*AP*TP*CP*TP*T)-3') | INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY | X-ray diffraction | 2 | 21 | 2000-04-04 | ||||
| 122 | 1AZ0|1|C+ 1AZ0|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ECORV ENDONUCLEASE/DNA COMPLEX | X-ray diffraction | 2 | 22 | 1998-06-19 | ||||
| 123 | 1BGB|1|C+ 1BGB|1|D | DNA (5'-D(*CP*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3') | ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA | X-ray diffraction | 2 | 21 | 1998-10-28 | ||||
| 124 | 1BSU|1|D+ 1BSU|1|C | DNA (5'-D(*AP*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3'), DNA (5'-D(P*AP*AP*GP*AP*(5CM)P*IP*TP*CP*TP*T)-3') | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-ray diffraction | 2 | 21 | 1998-09-09 | ||||
| 125 | 1BC7|1|A+ 1BC7|1|B | DNA (5'-D(*CP*AP*CP*AP*TP*CP*CP*TP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*AP*GP*GP*AP*TP*GP*TP*G)-3') | SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX | X-ray diffraction | 2.01 | 22 | 1999-01-21 | ||||
| 126 | 1B95|1|C+ 1B95|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 2.05 | 22 | 1999-02-26 | ||||
| 127 | 1ZAA|1|A+ 1ZAA|1|B | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZINC FINGER-DNA RECOGNITION: CRYSTAL STRUCTURE OF A ZIF268-DNA COMPLEX AT 2.1 ANGSTROMS | X-ray diffraction | 2.1 | 22 | 1993-10-31 | ||||
| 128 | 1A1F|1|B+ 1A1F|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*CP*CP*AP*CP*GP*C)-3') | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-ray diffraction | 2.1 | 22 | 1998-06-10 | ||||
| 129 | 2UP1|1|B | DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') | STRUCTURE OF UP1-TELOMERIC DNA COMPLEX | X-ray diffraction | 2.1 | 11 | 1999-11-10 | ||||
| 130 | 1A3Q|1|C+ 1A3Q|1|D | DNA (5'-D(*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*AP*TP*TP*CP*CP*CP*C)-3') | HUMAN NF-KAPPA-B P52 BOUND TO DNA | X-ray diffraction | 2.1 | 22 | 1998-06-11 | ||||
| 131 | 1RV5|1|C+ 1RV5|1|D | 5'-D(*AP*AP*AP*GP*AP*T*AP*TP*CP*TP*T)-3' | COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) | X-ray diffraction | 2.1 | 22 | 1998-11-11 | ||||
| 132 | 1RVB|1|C+ 1RVB|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-ray diffraction | 2.1 | 22 | 1995-01-26 | ||||
| 133 | 1BSS|1|C+ 1BSS|1|D | 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | ECORV-T93A/DNA/CA2+ | X-ray diffraction | 2.15 | 22 | 1998-09-02 | ||||
| 134 | 1BUA|1|C+ 1BUA|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*CP*IP*TP*CP*TP*T)-3') | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-ray diffraction | 2.15 | 22 | 1998-09-09 | ||||
| 135 | 1SX8|1|C+ 1SX8|1|D | 5'-D(*C*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3' | EcoRV bound to cognate DNA and Mn2+ | X-ray diffraction | 2.15 | 20 | 2004-04-06 | ||||
| 136 | 3G0Q|1|B+ 3G0Q|1|C | 5'-D(*AP*AP*GP*AP*CP*(8OG)P*GP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*CP*AP*GP*TP*CP*TP*T)-3' | Crystal Structure of MutY bound to its inhibitor DNA | X-ray diffraction | 2.2 | 21 | 2009-11-17 | ||||
| 137 | 2SSP|1|B+ 2SSP|1|A | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*TP*(AAB)P*AP*TP*CP*TP*T)-3') | LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA | X-ray diffraction | 2.25 | 21 | 1999-05-06 | ||||
| 138 | 1A1L|1|B+ 1A1L|1|C | DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*GP*CP*CP*CP*AP*CP*GP*C)-3') | ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-ray diffraction | 2.3 | 22 | 1998-06-17 | ||||
| 139 | 1NFK|1|C+ 1NFK|1|D | DNA (5'-D(*TP*GP*GP*GP*AP*AP*TP*TP*CP*CP*C)-3') | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER | X-ray diffraction | 2.3 | 22 | 1996-12-23 | ||||
| 140 | 1B96|1|C+ 1B96|1|D | DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3') | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-ray diffraction | 2.3 | 22 | 1999-02-26 | ||||
| 141 | 2AVJ|1|A | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 11 | 2006-03-28 | ||||
| 142 | 2AVJ|1|B | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 11 | 2006-03-28 | ||||
| 143 | 2AVJ|1|C | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 11 | 2006-03-28 | ||||
| 144 | 2AVJ|1|D | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 11 | 2006-03-28 | ||||
| 145 | 2AVJ|1|E | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 11 | 2006-03-28 | ||||
| 146 | 2AVJ|1|F | 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*GP*GP*GP*G)-3' | G4(Br)UTTG4 dimeric quadruplex | X-ray diffraction | 2.39 | 11 | 2006-03-28 | ||||
| 147 | 1KU7|1|B+ 1KU7|1|C | 5'-D(*CP*CP*TP*TP*GP*AP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*TP*TP*TP*GP*TP*CP*AP*AP*G)-3' | Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA | X-ray diffraction | 2.4 | 22 | 2002-03-29 | ||||
| 148 | 2GWS|1|F+ 2GWS|1|G+ 2GWS|1|H | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 21 | 2006-09-05 | ||||
| 149 | 2GWS|1|J+ 2GWS|1|K+ 2GWS|1|L | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 21 | 2006-09-05 | ||||
| 150 | 2GWS|1|N+ 2GWS|1|R+ 2GWS|1|Q | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 21 | 2006-09-05 | ||||
| 151 | 2GWS|1|T+ 2GWS|1|P+ 2GWS|1|D | 5'-D(*CP*GP*GP*CP*AP*GP*CP*GP*CP*AP*C)-3', 5'-D(*GP*TP*GP*CP*GP*G)-3', 5'-D(P*GP*CP*CP*G)-3' | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-ray diffraction | 2.4 | 21 | 2006-09-05 | ||||
| 152 | 3L1Q|1|A+ 3L1Q|1|B | 5'-D(*TP*GP*GP*CP*CP*TP*TP*AP*AP*GP*G)-3' | The crystal structure of the undecamer d(TGGCCTTAAGG) | X-ray diffraction | 2.5 | 22 | 2010-10-27 | ||||
| 153 | 1VRL|1|B+ 1VRL|1|C | 5'-D(*AP*AP*GP*AP*CP*(8OG)P*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*T)-3' | MutY adenine glycosylase in complex with DNA and soaked adenine free base | X-ray diffraction | 2.5 | 20 | 2005-03-22 | ||||
| 154 | 1HUZ|1|C+ 1HUZ|1|D | 5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*CP*CP*T)-3' | CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP | X-ray diffraction | 2.6 | 16 | 2001-04-23 | ||||
| 155 | 1HUO|1|C+ 1HUO|1|D | 5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*CP*C)-3' | CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP | X-ray diffraction | 2.6 | 15 | 2001-04-23 | ||||
| 156 | 1HUZ|1|T+ 1HUZ|1|P | 5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*CP*CP*T)-3' | CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP | X-ray diffraction | 2.6 | 16 | 2001-04-23 | ||||
| 157 | 1HUO|1|T+ 1HUO|1|P | 5'-D(*AP*AP*TP*AP*GP*GP*CP*GP*TP*CP*G)-3', 5'-D(P*CP*GP*AP*CP*GP*CP*C)-3' | CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP | X-ray diffraction | 2.6 | 15 | 2001-04-23 | ||||
| 158 | 1HLO|1|C+ 1HLO|1|D | DNA (5'-D(*AP*CP*CP*AP*CP*GP*TP*GP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*CP*CP*AP*CP*GP*TP*GP*GP*T)-3') | THE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW INSIGHTS INTO MECHANISMS OF TRANSCRIPTIONAL CONTROL | X-ray diffraction | 2.8 | 22 | 1997-10-27 | ||||
| 159 | 4DPV|1|N | DNA (5'-D(*AP*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3') | PARVOVIRUS/DNA COMPLEX | X-ray diffraction | 2.9 | 11 | 1997-04-01 | ||||
| 160 | 1D0E|1|E+ 1D0E|1|F | 5'-D(*TP*TP*TP*CP*AP*TP*GP*CP*AP*TP*G)-3' | CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN | X-ray diffraction | 3 | 22 | 2000-04-04 | ||||
| 161 | 2V2T|1|C+ 2V2T|1|D | 5'-D(*CP*GP*GP*GP*AP*AP*TP*TP*CP*CP*CP)-3' | X-ray structure of a NF-kB p50-RelB-DNA complex | X-ray diffraction | 3.05 | 22 | 2007-07-03 | ||||
| 162 | 3DO7|1|C+ 3DO7|1|D | 5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3' | X-ray structure of a NF-kB p52/RelB/DNA complex | X-ray diffraction | 3.05 | 21 | 2009-07-21 | ||||
| 163 | 3DO7|1|E | 5'-D(*DCP*DGP*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DCP*DC)-3' | X-ray structure of a NF-kB p52/RelB/DNA complex | X-ray diffraction | 3.05 | 11 | 2009-07-21 | ||||
| 164 | 1P5W|1|B | 5'-D(P*(3DR)P*TP*AP*CP*CP*TP*CP*TP*TP*GP*C)-3' | The structures of host range controlling regions of the capsids of canine and feline parvoviruses and mutants | X-ray diffraction | 3.3 | 11 | 2003-08-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1NR8|1|B | The crystal structure of a D-Lysine-based chiral PNA-DNA duplex | X-RAY DIFFRACTION | 1.66 | 0 | NAKB_NA_annotation | NAKB_protein_annotation | |
| 2 | 1PO6|1|B | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) | X-RAY DIFFRACTION | 2.1 | 11 | ribonucleoprotein,structural | ||
| 3 | 1U1K|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTT 7DA GGG); A Human Telomeric Repeat Containing 7-deaza-adenine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 4 | 1U1R|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(2PR)G); A Human Telomeric Repeat Containing 2-aminopurine | X-RAY DIFFRACTION | 1.8 | 11 | ribonucleoprotein,structural | ||
| 5 | 1U1O|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(DI)G); A Human Telomeric Repeat Containing Inosine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 6 | 1U1L|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTT PRN GGG); A Human Telomeric Repeat Containing nebularine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 7 | 2UP1|1|B | STRUCTURE OF UP1-TELOMERIC DNA COMPLEX | X-RAY DIFFRACTION | 2.1 | 11 | ribonucleoprotein,structural | ||
| 8 | 1U1M|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTA 7GU GG); A Human Telomeric Repeat Containing 7-deaza-guanine | X-RAY DIFFRACTION | 2 | 11 | ribonucleoprotein,structural | ||
| 9 | 1U1Q|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTA(DI)GG); A Human Telomeric Repeat Containing Inosine | X-RAY DIFFRACTION | 1.8 | 11 | ribonucleoprotein,structural | ||
| 10 | 1U1N|1|B | Crystal Structure of UP1 Complexed With d(TTAGGGTTA (PRN)GG); A Human Telomeric Repeat Containing Nebularine | X-RAY DIFFRACTION | 2.1 | 11 | ribonucleoprotein,structural | ||
| 11 | 3L1Q|1|A+ 3L1Q|1|B | The crystal structure of the undecamer d(TGGCCTTAAGG) | X-RAY DIFFRACTION | 2.5 | 22 | NAKB_NA_annotation | NAKB_protein_annotation | |
| 12 | 2R9L|1|D+ 2R9L|1|C | Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA | X-RAY DIFFRACTION | 2.4 | 0 | B-form double helix,double helix,structure | enzyme,ligase | |
| 13 | 2GWS|1|F+ 2GWS|1|G+ 2GWS|1|H | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 14 | 2GWS|1|J+ 2GWS|1|K+ 2GWS|1|L | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 15 | 2GWS|1|N+ 2GWS|1|R+ 2GWS|1|Q | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 16 | 2GWS|1|T+ 2GWS|1|P+ 2GWS|1|D | Crystal Structure of human DNA Polymerase lambda with a G/G mismatch in the primer terminus | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 17 | 1XSL|1|F+ 1XSL|1|G+ 1XSL|1|H | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 21 | enzyme,polymerase,transferase | ||
| 18 | 1XSL|1|J+ 1XSL|1|K+ 1XSL|1|L | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 21 | enzyme,polymerase,transferase | ||
| 19 | 1XSL|1|N+ 1XSL|1|O+ 1XSL|1|P | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 21 | enzyme,polymerase,transferase | ||
| 20 | 1XSL|1|B+ 1XSL|1|C+ 1XSL|1|D | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap | X-RAY DIFFRACTION | 2.3 | 21 | enzyme,polymerase,transferase | ||
| 21 | 1RZT|1|F+ 1RZT|1|G+ 1RZT|1|H | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 20 | enzyme,polymerase,transferase | ||
| 22 | 1RZT|1|B+ 1RZT|1|C+ 1RZT|1|D | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 20 | enzyme,polymerase,transferase | ||
| 23 | 1RZT|1|N+ 1RZT|1|O+ 1RZT|1|P | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 20 | enzyme,polymerase,transferase | ||
| 24 | 1RZT|1|J+ 1RZT|1|K+ 1RZT|1|L | Crystal structure of DNA polymerase lambda complexed with a two nucleotide gap DNA molecule | X-RAY DIFFRACTION | 2.1 | 20 | enzyme,polymerase,transferase | ||
| 25 | 3MGH|1|E+ 3MGH|1|F+ 3MGH|1|G | Binary complex of a DNA polymerase lambda loop mutant | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 26 | 3MGH|1|T+ 3MGH|1|P+ 3MGH|1|D | Binary complex of a DNA polymerase lambda loop mutant | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 27 | 3PML|1|C+ 3PML|1|H+ 3PML|1|D | crystal structure of a polymerase lambda variant with a dGTP analog opposite a templating T | X-RAY DIFFRACTION | 2.6 | 21 | enzyme,polymerase,transferase | ||
| 28 | 3C5G|1|T+ 3C5G|1|P+ 3C5G|1|D | Structure of a ternary complex of the R517K Pol lambda mutant | X-RAY DIFFRACTION | 2.2 | 21 | enzyme,polymerase,transferase | ||
| 29 | 3C5G|1|U+ 3C5G|1|Q+ 3C5G|1|E | Structure of a ternary complex of the R517K Pol lambda mutant | X-RAY DIFFRACTION | 2.2 | 21 | enzyme,polymerase,transferase | ||
| 30 | 3MDC|1|T+ 3MDC|1|P+ 3MDC|1|D | DNA polymerase lambda in complex with dFdCTP | X-RAY DIFFRACTION | 1.999 | 21 | enzyme,polymerase,transferase | ||
| 31 | 3PMN|1|B+ 3PMN|1|C+ 3PMN|1|D | ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site | X-RAY DIFFRACTION | 2.2 | 21 | enzyme,polymerase,transferase | ||
| 32 | 3PNC|1|C+ 3PNC|1|B+ 3PNC|1|D | Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site | X-RAY DIFFRACTION | 2 | 21 | enzyme,polymerase,transferase | ||
| 33 | 2PFN|1|T+ 2PFN|1|P+ 2PFN|1|D | Na in the active site of DNA Polymerase lambda | X-RAY DIFFRACTION | 1.9 | 21 | enzyme,polymerase,transferase | ||
| 34 | 3MGI|1|T+ 3MGI|1|P+ 3MGI|1|D | Ternary complex of a DNA polymerase lambda loop mutant | X-RAY DIFFRACTION | 2.603 | 21 | enzyme,polymerase,transferase | ||
| 35 | 1XSN|1|T+ 1XSN|1|P+ 1XSN|1|D | Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap and ddTTP | X-RAY DIFFRACTION | 1.95 | 21 | enzyme,polymerase,transferase | ||
| 36 | 2PFO|1|T+ 2PFO|1|P+ 2PFO|1|D | DNA Polymerase lambda in complex with DNA and dUPNPP | X-RAY DIFFRACTION | 2 | 21 | enzyme,polymerase,transferase | ||
| 37 | 3MDA|1|T+ 3MDA|1|P+ 3MDA|1|D | DNA polymerase lambda in complex with araC | X-RAY DIFFRACTION | 2.031 | 22 | enzyme,polymerase,transferase | ||
| 38 | 1XSP|1|T+ 1XSP|1|P+ 1XSP|1|D | Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate | X-RAY DIFFRACTION | 2.2 | 22 | enzyme,polymerase,transferase | ||
| 39 | 2PFP|1|T+ 2PFP|1|P+ 2PFP|1|D | DNA Polymerase lambda in complex with DNA and dCTP | X-RAY DIFFRACTION | 2.1 | 21 | enzyme,polymerase,transferase | ||
| 40 | 2PFQ|1|T+ 2PFQ|1|P+ 2PFQ|1|D | Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal | X-RAY DIFFRACTION | 2.1 | 22 | enzyme,polymerase,transferase | ||
| 41 | 2IHM|1|U+ 2IHM|1|Q+ 2IHM|1|E | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 42 | 3C5F|1|T+ 3C5F|1|P+ 3C5F|1|D | Structure of a binary complex of the R517A Pol lambda mutant | X-RAY DIFFRACTION | 2.25 | 0 | enzyme,polymerase,transferase | ||
| 43 | 3C5F|1|U+ 3C5F|1|E | Structure of a binary complex of the R517A Pol lambda mutant | X-RAY DIFFRACTION | 2.25 | 0 | enzyme,polymerase,transferase | ||
| 44 | 2IHM|1|T+ 2IHM|1|P+ 2IHM|1|D | Polymerase mu in ternary complex with gapped 11mer DNA duplex and bound incoming nucleotide | X-RAY DIFFRACTION | 2.4 | 21 | enzyme,polymerase,transferase | ||
| 45 | 3PML|1|E+ 3PML|1|F+ 3PML|1|G | crystal structure of a polymerase lambda variant with a dGTP analog opposite a templating T | X-RAY DIFFRACTION | 2.6 | 21 | enzyme,polymerase,transferase | ||
| 46 | 3Q0C|1|B+ 3Q0C|1|C | Crystal structure of SUVH5 SRA-fully methylated CG DNA complex in space group P6122 | X-RAY DIFFRACTION | 2.6567 | 21 | enzyme,methylase,transferase | ||
| 47 | 3NDH|1|C+ 3NDH|1|D | Restriction endonuclease in complex with substrate DNA | X-RAY DIFFRACTION | 1.3 | 20 | double helix,structure | enzyme,hydrolase,nuclease | |
| 48 | 2ODI|1|C+ 2ODI|1|D | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 49 | 2Q10|1|C+ 2Q10|1|D | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-RAY DIFFRACTION | 1.75 | 22 | enzyme,hydrolase,nuclease | ||
| 50 | 2ODI|1|E+ 2ODI|1|F | Restriction Endonuclease BCNI-Cognate DNA Substrate Complex | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 51 | 2Q10|1|E+ 2Q10|1|F | RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX | X-RAY DIFFRACTION | 1.75 | 22 | enzyme,hydrolase,nuclease | ||
| 52 | 1YQK|1|B+ 1YQK|1|C | Human 8-oxoguanine glycosylase crosslinked with guanine containing DNA | X-RAY DIFFRACTION | 2.5 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 53 | 1TEZ|1|K+ 1TEZ|1|L | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 20 | enzyme,lyase | ||
| 54 | 1TEZ|1|I+ 1TEZ|1|J | COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS | X-RAY DIFFRACTION | 1.8 | 20 | enzyme,lyase | ||
| 55 | 2W36|1|C+ 2W36|1|D | Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,hydrolase,nuclease | ||
| 56 | 2W36|1|E+ 2W36|1|F | Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair | X-RAY DIFFRACTION | 2.1 | 16 | enzyme,hydrolase,nuclease | ||
| 57 | 3BM3|1|C+ 3BM3|1|D | Restriction endonuclease PspGI-substrate DNA complex | X-RAY DIFFRACTION | 1.7 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 58 | 3Q0F|1|B+ 3Q0F|1|C | Crystal structure of SUVH5 SRA- methylated CHH DNA complex | X-RAY DIFFRACTION | 2.75 | 21 | double helix,structure | enzyme,methylase,transferase | |
| 59 | 476D|1|A+ 476D|1|B | CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG | X-RAY DIFFRACTION | 1.3 | 22 | B-form double helix,double helix,structure | ||
| 60 | 2OAA|1|E+ 2OAA|1|F | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 22 | double helix,structure | enzyme,hydrolase,nuclease | |
| 61 | 2OAA|1|C+ 2OAA|1|D | Restriction endonuclease MvaI-cognate DNA substrate complex | X-RAY DIFFRACTION | 1.5 | 21 | double helix,structure | enzyme,hydrolase,nuclease | |
| 62 | 1RV5|1|C+ 1RV5|1|D | COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT) | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 63 | 1BSS|1|C+ 1BSS|1|D | ECORV-T93A/DNA/CA2+ | X-RAY DIFFRACTION | 2.15 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 64 | 2B0D|1|C+ 2B0D|1|D | EcoRV Restriction Endonuclease/GAATTC/Ca2+ | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 65 | 2B0E|1|C+ 2B0E|1|D | EcoRV Restriction Endonuclease/GAAUTC/Ca2+ | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 66 | 1BUA|1|C+ 1BUA|1|D | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-RAY DIFFRACTION | 2.15 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 67 | 1BSU|1|D+ 1BSU|1|C | STRUCTURAL AND ENERGETIC ORIGINS OF INDIRECT READOUT IN SITE-SPECIFIC DNA CLEAVAGE BY A RESTRICTION ENDONUCLEASE | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 68 | 1AZ0|1|C+ 1AZ0|1|D | ECORV ENDONUCLEASE/DNA COMPLEX | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 69 | 1RVA|1|C+ 1RVA|1|D | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 70 | 1RVB|1|C+ 1RVB|1|D | MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 71 | 1SUZ|1|C+ 1SUZ|1|D | The structure of K92A EcoRV bound to cognate DNA and Mg2+ | X-RAY DIFFRACTION | 1.8 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 72 | 1SX8|1|C+ 1SX8|1|D | EcoRV bound to cognate DNA and Mn2+ | X-RAY DIFFRACTION | 2.15 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 73 | 1B94|1|C+ 1B94|1|D | RESTRICTION ENDONUCLEASE ECORV WITH CALCIUM | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 74 | 1B97|1|C+ 1B97|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 75 | 1B95|1|C+ 1B95|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 2.05 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 76 | 1B96|1|C+ 1B96|1|D | ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP | X-RAY DIFFRACTION | 2.3 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 77 | 1EO4|1|C+ 1EO4|1|D | ECORV BOUND TO MN2+ AND COGNATE DNA CONTAINING A 3'S SUBSTITION AT THE CLEAVAGE SITE | X-RAY DIFFRACTION | 1.9 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 78 | 1EON|1|C+ 1EON|1|D | ECORV BOUND TO 3'-S-PHOSPHOROTHIOLATE DNA AND CA2+ | X-RAY DIFFRACTION | 1.6 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 79 | 1EO3|1|C+ 1EO3|1|D | INHIBITION OF ECORV ENDONUCLEASE BY DEOXYRIBO-3'-S-PHOSPHOROTHIOLATES: A HIGH RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDY | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 80 | 2GE5|1|C+ 2GE5|1|D | EcoRV Restriction Endonuclease C-terminal deletion mutant/GATATC/Ca2+ | X-RAY DIFFRACTION | 2.4 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 81 | 1BGB|1|C+ 1BGB|1|D | ECORV ENDONUCLEASE COMPLEX WITH 5'-CGGGATATCCC DNA | X-RAY DIFFRACTION | 2 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 82 | 1RRQ|1|B+ 1RRQ|1|C | MutY adenine glycosylase in complex with DNA containing an A:oxoG pair | X-RAY DIFFRACTION | 2.22 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 83 | 3G0Q|1|B+ 3G0Q|1|C | Crystal Structure of MutY bound to its inhibitor DNA | X-RAY DIFFRACTION | 2.2 | 21 | double helix,structure | enzyme,hydrolase | |
| 84 | 1VRL|1|B+ 1VRL|1|C | MutY adenine glycosylase in complex with DNA and soaked adenine free base | X-RAY DIFFRACTION | 2.5 | 20 | enzyme,hydrolase | ||
| 85 | 1RRS|1|B+ 1RRS|1|C | MutY adenine glycosylase in complex with DNA containing an abasic site | X-RAY DIFFRACTION | 2.4 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 86 | 1P59|1|B+ 1P59|1|C | Structure of a non-covalent Endonuclease III-DNA Complex | X-RAY DIFFRACTION | 2.5 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 87 | 1ORN|1|B+ 1ORN|1|C | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex | X-RAY DIFFRACTION | 1.7 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 88 | 1ORP|1|B+ 1ORP|1|C | Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex | X-RAY DIFFRACTION | 2.2 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 89 | 2ZKF|1|C+ 2ZKF|1|D | Crystal structure of the SRA domain of mouse Np95 in complex with hemi-methylated CpG DNA | X-RAY DIFFRACTION | 2.55 | 22 | B-form double helix,double helix,structure | enzyme,ligase | |
| 90 | 2SSP|1|B+ 2SSP|1|A | LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA | X-RAY DIFFRACTION | 2.25 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 91 | 1SSP|1|B+ 1SSP|1|A | WILD-TYPE URACIL-DNA GLYCOSYLASE BOUND TO URACIL-CONTAINING DNA | X-RAY DIFFRACTION | 1.9 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 92 | 1AAY|1|B+ 1AAY|1|C | ZIF268 ZINC FINGER-DNA COMPLEX | X-RAY DIFFRACTION | 1.6 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 93 | 1JK1|1|B+ 1JK1|1|C | Zif268 D20A Mutant Bound to WT DNA Site | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 94 | 1A1H|1|B+ 1A1H|1|C | QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 1.6 | 22 | double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 95 | 1A1I|1|B+ 1A1I|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 1.6 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 96 | 1A1L|1|B+ 1A1L|1|C | ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE) | X-RAY DIFFRACTION | 2.3 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 97 | 1JK2|1|B+ 1JK2|1|C | Zif268 D20A mutant bound to the GCT DNA site | X-RAY DIFFRACTION | 1.65 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 98 | 1A1G|1|B+ 1A1G|1|C | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 99 | 1A1J|1|B+ 1A1J|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) | X-RAY DIFFRACTION | 2 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 100 | 1A1K|1|B+ 1A1K|1|C | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-RAY DIFFRACTION | 1.9 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 101 | 1A1F|1|B+ 1A1F|1|C | DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE) | X-RAY DIFFRACTION | 2.1 | 22 | double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 102 | 2X6V|1|C+ 2X6V|1|D | Crystal structure of human TBX5 in the DNA-bound and DNA-free form | X-RAY DIFFRACTION | 2.2 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 103 | 3KET|1|B+ 3KET|1|C | Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator | X-RAY DIFFRACTION | 2.4 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 104 | 3MQY|1|D+ 3MQY|1|F+ 3MQY|1|C+ 3MQY|1|E | SgrAI with cleaved DNA and Magnesium bound | X-RAY DIFFRACTION | 2 | 36 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 105 | 1NFK|1|C+ 1NFK|1|D | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER | X-RAY DIFFRACTION | 2.3 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 106 | 2XSD|1|A+ 2XSD|1|B | Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA | X-RAY DIFFRACTION | 2.049 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 107 | 1E3O|1|A+ 1E3O|1|B | Crystal structure of Oct-1 POU dimer bound to MORE | X-RAY DIFFRACTION | 1.9 | 22 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | ||
| 108 | 3NM9|1|E+ 3NM9|1|F | HMGD(M13A)-DNA complex | X-RAY DIFFRACTION | 2.85 | 20 | DNA-binding transcription factor (TF),HMG box,chromatin,other α-helix,regulatory,structural,transcription | ||
| 109 | 2V2T|1|C+ 2V2T|1|D | X-ray structure of a NF-kB p50-RelB-DNA complex | X-RAY DIFFRACTION | 3.05 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 110 | 3DO7|1|C+ 3DO7|1|D | X-ray structure of a NF-kB p52/RelB/DNA complex | X-RAY DIFFRACTION | 3.05 | 21 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 111 | 3OH9|1|B+ 3OH9|1|C | AlkA Undamaged DNA Complex: Interrogation of a T:A base pair | X-RAY DIFFRACTION | 2.802 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase | |
| 112 | 2C9N|1|A+ 2C9N|1|B | Structure of the Epstein-Barr virus ZEBRA protein at approximately 3. 5 Angstrom resolution | X-RAY DIFFRACTION | 3.3 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 113 | 1A3Q|1|C+ 1A3Q|1|D | HUMAN NF-KAPPA-B P52 BOUND TO DNA | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 114 | 2H8C|1|Y+ 2H8C|1|Z | Structure of RusA D70N in complex with DNA | X-RAY DIFFRACTION | 3.1 | 21 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 115 | 2H8C|1|W+ 2H8C|1|X | Structure of RusA D70N in complex with DNA | X-RAY DIFFRACTION | 3.1 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 116 | 2P0J|1|C+ 2P0J|1|D | Structure of restriction endonuclease BstYI bound to non-cognate DNA | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 117 | 2DPU|1|E+ 2DPU|1|D | Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA | X-RAY DIFFRACTION | 3.1 | 21 | double helix,structure | DNA replication/repair,regulatory | |
| 118 | 1BC7|1|A+ 1BC7|1|B | SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX | X-RAY DIFFRACTION | 2.01 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 119 | 1ZAA|1|A+ 1ZAA|1|B | ZINC FINGER-DNA RECOGNITION: CRYSTAL STRUCTURE OF A ZIF268-DNA COMPLEX AT 2.1 ANGSTROMS | X-RAY DIFFRACTION | 2.1 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 120 | 2Z3X|1|D+ 2Z3X|1|E | Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species | X-RAY DIFFRACTION | 2.1 | 22 | A-form double helix,double helix,structure | chromatin,structural | |
| 121 | 1HLO|1|C+ 1HLO|1|D | THE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW INSIGHTS INTO MECHANISMS OF TRANSCRIPTIONAL CONTROL | X-RAY DIFFRACTION | 2.8 | 22 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 122 | 2XO7|1|C+ 2XO7|1|B | Crystal structure of a dA:O-allylhydroxylamine-dC basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus | X-RAY DIFFRACTION | 2.85 | 21 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 123 | 3FC3|1|C+ 3FC3|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I | X-RAY DIFFRACTION | 1.75 | 18 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 124 | 3GOX|1|C+ 3GOX|1|D | Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA | X-RAY DIFFRACTION | 1.5 | 20 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 125 | 1KU7|1|B+ 1KU7|1|C | Crystal Structure of Thermus aquatics RNA Polymerase SigmaA Subunit Region 4 Bound to-35 Element DNA | X-RAY DIFFRACTION | 2.4 | 22 | B-form double helix,double helix,structure | regulatory,transcription | |
| 126 | 3GXQ|1|D+ 3GXQ|1|C | Structure of ArtA and DNA complex | X-RAY DIFFRACTION | 2.35 | 21 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | |
| 127 | 3NM9|1|K+ 3NM9|1|L | HMGD(M13A)-DNA complex | X-RAY DIFFRACTION | 2.85 | 21 | DNA-binding transcription factor (TF),HMG box,chromatin,other α-helix,regulatory,structural,transcription | ||
| 128 | 3DO7|1|E | X-ray structure of a NF-kB p52/RelB/DNA complex | X-RAY DIFFRACTION | 3.05 | 11 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 129 | 3NM9|1|B+ 3NM9|1|C | HMGD(M13A)-DNA complex | X-RAY DIFFRACTION | 2.85 | 20 | DNA-binding transcription factor (TF),HMG box,chromatin,other α-helix,regulatory,structural,transcription | ||
| 130 | 3NM9|1|N+ 3NM9|1|O | HMGD(M13A)-DNA complex | X-RAY DIFFRACTION | 2.85 | 20 | DNA-binding transcription factor (TF),HMG box,chromatin,other α-helix,regulatory,structural,transcription | ||
| 131 | 3NM9|1|H+ 3NM9|1|I | HMGD(M13A)-DNA complex | X-RAY DIFFRACTION | 2.85 | 20 | DNA-binding transcription factor (TF),HMG box,chromatin,other α-helix,regulatory,structural,transcription | ||
| 132 | 2XGP|1|T+ 2XGP|1|P | Yeast DNA polymerase eta in complex with C8-2-acetylaminofluorene containing DNA | X-RAY DIFFRACTION | 2.7 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 133 | 2XGQ|1|T+ 2XGQ|1|P | Structure of yeast DNA polymerase eta in complex with C8-N-acetyl-2- aminoanthracene containing DNA | X-RAY DIFFRACTION | 2.7 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 134 | 2XGP|1|U+ 2XGP|1|Q | Yeast DNA polymerase eta in complex with C8-2-acetylaminofluorene containing DNA | X-RAY DIFFRACTION | 2.7 | 19 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 135 | 2XGQ|1|U+ 2XGQ|1|Q | Structure of yeast DNA polymerase eta in complex with C8-N-acetyl-2- aminoanthracene containing DNA | X-RAY DIFFRACTION | 2.7 | 19 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 136 | 2R8J|1|T+ 2R8J|1|P | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-RAY DIFFRACTION | 3.1 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 137 | 2R8J|1|U+ 2R8J|1|Q | Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA | X-RAY DIFFRACTION | 3.1 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 138 | 2FLN|1|T+ 2FLN|1|P | binary complex of catalytic core of human DNA polymerase iota with DNA (template A) | X-RAY DIFFRACTION | 2.5 | 16 | double helix,structure | enzyme,polymerase,transferase | |
| 139 | 2FLP|1|T+ 2FLP|1|P | Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G) | X-RAY DIFFRACTION | 2.4 | 16 | double helix,structure | enzyme,polymerase,transferase | |
| 140 | 3G6Y|1|T+ 3G6Y|1|P | Ternary complex of DNA Polymerase iota:DNA:dTTP with an abasic site at the templating position | X-RAY DIFFRACTION | 2.1 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 141 | 2FLL|1|T+ 2FLL|1|P | Ternary complex of human DNA polymerase iota with DNA and dTTP | X-RAY DIFFRACTION | 2.6 | 16 | enzyme,polymerase,transferase | ||
| 142 | 3G6X|1|T+ 3G6X|1|P | Ternary complex of DNA Polymerase iota:DNA:dGTP with an abasic site at the templating position | X-RAY DIFFRACTION | 2.08 | 15 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 143 | 3MR3|1|T+ 3MR3|1|P | Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) | X-RAY DIFFRACTION | 1.75 | 20 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 144 | 1HUZ|1|C+ 1HUZ|1|D | CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP | X-RAY DIFFRACTION | 2.6 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 145 | 1HUO|1|C+ 1HUO|1|D | CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP | X-RAY DIFFRACTION | 2.6 | 15 | double helix,structure | enzyme,polymerase,transferase | |
| 146 | 1HUO|1|T+ 1HUO|1|P | CRYSTAL STRUCTURE OF DNA POLYMERASE BETA COMPLEXED WITH DNA AND CR-TMPPCP | X-RAY DIFFRACTION | 2.6 | 15 | double helix,structure | enzyme,polymerase,transferase | |
| 147 | 1HUZ|1|T+ 1HUZ|1|P | CRYSTAL STRUCTURE OF DNA POLYMERASE COMPLEXED WITH DNA AND CR-PCP | X-RAY DIFFRACTION | 2.6 | 16 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 148 | 1D0E|1|E+ 1D0E|1|F | CRYSTAL STRUCTURES OF THE N-TERMINAL FRAGMENT FROM MOLONEY MURINE LEUKEMIA VIRUS REVERSE TRANSCRIPTASE COMPLEXED WITH NUCLEIC ACID: FUNCTIONAL IMPLICATIONS FOR TEMPLATE-PRIMER BINDING TO THE FINGERS DOMAIN | X-RAY DIFFRACTION | 3 | 22 | enzyme,polymerase,transferase | ||
| 149 | 2NQ9|1|D+ 2NQ9|1|B+ 2NQ9|1|C | High resolution crystal structure of Escherichia coli endonuclease IV (Endo IV) Y72A mutant bound to damaged DNA | X-RAY DIFFRACTION | 1.45 | 22 | enzyme,hydrolase,nuclease | ||
| 150 | 2I0Q|1|D | Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins | X-RAY DIFFRACTION | 1.91 | 11 | chromatin,structural,telomere | ||
| 151 | 1PH5|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTG(3DR)GG | X-RAY DIFFRACTION | 2.3 | 11 | quadruplex,structure | chromatin,structural,telomere | |
| 152 | 1PH6|1|D | Crystal Structure of THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGTGG | X-RAY DIFFRACTION | 2.1 | 11 | quadruplex,structure | chromatin,structural,telomere | |
| 153 | 1PH7|1|D | CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGIGG | X-RAY DIFFRACTION | 2.9 | 11 | quadruplex,structure | chromatin,structural,telomere | |
| 154 | 2HRI|1|B | A parallel stranded human telomeric quadruplex in complex with the porphyrin TMPyP4 | X-RAY DIFFRACTION | 2.09 | 11 | function,quadruplex,structure,telomeric DNA | ||
| 155 | 2HRI|1|A | A parallel stranded human telomeric quadruplex in complex with the porphyrin TMPyP4 | X-RAY DIFFRACTION | 2.09 | 11 | function,quadruplex,structure,telomeric DNA | ||
| 156 | 2AVJ|1|B | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | ||
| 157 | 2AVH|1|A | G4T3G4 dimeric quadruplex structure | X-RAY DIFFRACTION | 1.5 | 11 | quadruplex,structure | ||
| 158 | 2AVJ|1|A | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | ||
| 159 | 2AVJ|1|D | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | ||
| 160 | 2AVJ|1|E | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | ||
| 161 | 2AVJ|1|C | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | ||
| 162 | 2AVJ|1|F | G4(Br)UTTG4 dimeric quadruplex | X-RAY DIFFRACTION | 2.39 | 11 | quadruplex,structure | ||
| 163 | 1P5W|1|B | The structures of host range controlling regions of the capsids of canine and feline parvoviruses and mutants | X-RAY DIFFRACTION | 3.3 | 11 | structural,virus | ||
| 164 | 4DPV|1|N | PARVOVIRUS/DNA COMPLEX | X-RAY DIFFRACTION | 2.9 | 11 | structural,virus |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: