RNA 3D Hub //

Equivalence class DNA_20.0_88087.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
13OYM|1|C+ 3OYM|1|D (rep)DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV N224H mutant intasome bound to manganeseX-ray diffraction2.02362010-11-17
23OY9|1|C+ 3OY9|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolutionX-ray diffraction2.55362010-10-20
33OYB|1|C+ 3OYB|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048X-ray diffraction2.54362010-11-17
43OYL|1|C+ 3OYL|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048X-ray diffraction2.54362010-11-17
53OYG|1|C+ 3OYG|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG)X-ray diffraction2.56362010-11-17
63OYF|1|C+ 3OYF|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810X-ray diffraction2.51362010-11-17
73OYC|1|C+ 3OYC|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICAX-ray diffraction2.66362010-11-17
83OYD|1|C+ 3OYD|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160X-ray diffraction2.54362010-11-17
93OYA|1|C+ 3OYA|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolutionX-ray diffraction2.65362010-10-20
103OYN|1|C+ 3OYN|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048X-ray diffraction2.68362010-11-17
113L2R|1|C+ 3L2R|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesiumX-ray diffraction2.88362010-02-09
123OYK|1|C+ 3OYK|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217H mutant intasome bound to manganeseX-ray diffraction2.72362010-11-17
133OYE|1|C+ 3OYE|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2X-ray diffraction2.74362010-11-17
143OYH|1|C+ 3OYH|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536X-ray diffraction2.74362010-11-17
153OYJ|1|C+ 3OYJ|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048X-ray diffraction2.68362010-11-17
163OYI|1|C+ 3OYI|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')Crystal structure of the PFV S217Q mutant intasome in complex with manganeseX-ray diffraction2.72362010-11-17
173OS0|1|C+ 3OS0|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')PFV strand transfer complex (STC) at 2.81 A resolutionX-ray diffraction2.81362010-11-17
183L2U|1|C+ 3L2U|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir)X-ray diffraction3.15362010-02-09
193L2W|1|C+ 3L2W|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir)X-ray diffraction3.2362010-02-09
203L2Q|1|C+ 3L2Q|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo formX-ray diffraction3.25362010-02-09
213L2V|1|C+ 3L2V|1|D5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)X-ray diffraction3.2362010-02-09
223OS1|1|C+ 3OS1|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*(2DA))-3')PFV target capture complex (TCC) at 2.97 A resolutionX-ray diffraction2.97362010-11-17
233OS2|1|C+ 3OS2|1|DDNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3')PFV target capture complex (TCC) at 3.32 A resolutionX-ray diffraction3.32362010-11-17

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
13OS1|1|C+ 3OS1|1|DPFV target capture complex (TCC) at 2.97 A resolutionX-RAY DIFFRACTION2.9736enzyme,recombinase
23OS2|1|C+ 3OS2|1|DPFV target capture complex (TCC) at 3.32 A resolutionX-RAY DIFFRACTION3.3236enzyme,recombinase
33OS0|1|C+ 3OS0|1|DPFV strand transfer complex (STC) at 2.81 A resolutionX-RAY DIFFRACTION2.8136enzyme,recombinase
43L2Q|1|C+ 3L2Q|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in apo formX-RAY DIFFRACTION3.2536enzyme,recombinase
53L2R|1|C+ 3L2R|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesiumX-RAY DIFFRACTION2.8836enzyme,recombinase
63OYJ|1|C+ 3OYJ|1|DCrystal structure of the PFV S217Q mutant intasome in complex with magnesium and the INSTI MK2048X-RAY DIFFRACTION2.6836enzyme,recombinase
73OYG|1|C+ 3OYG|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound1 (CompoundG)X-RAY DIFFRACTION2.5636enzyme,recombinase
83OYB|1|C+ 3OYB|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK2048X-RAY DIFFRACTION2.5436enzyme,recombinase
93OYE|1|C+ 3OYE|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI Compound2X-RAY DIFFRACTION2.7436enzyme,recombinase
103OYD|1|C+ 3OYD|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI GS9160X-RAY DIFFRACTION2.5436enzyme,recombinase
113OYF|1|C+ 3OYF|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI L-870,810X-RAY DIFFRACTION2.5136enzyme,recombinase
123OYH|1|C+ 3OYH|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI MK0536X-RAY DIFFRACTION2.7436enzyme,recombinase
133OYA|1|C+ 3OYA|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and raltegravir at 2.65 resolutionX-RAY DIFFRACTION2.6536enzyme,recombinase
143OYC|1|C+ 3OYC|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI PICAX-RAY DIFFRACTION2.6636enzyme,recombinase
153OYI|1|C+ 3OYI|1|DCrystal structure of the PFV S217Q mutant intasome in complex with manganeseX-RAY DIFFRACTION2.7236enzyme,recombinase
163OY9|1|C+ 3OY9|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolutionX-RAY DIFFRACTION2.5536enzyme,recombinase
173OYK|1|C+ 3OYK|1|DCrystal structure of the PFV S217H mutant intasome bound to manganeseX-RAY DIFFRACTION2.7236enzyme,recombinase
183OYN|1|C+ 3OYN|1|DCrystal structure of the PFV N224H mutant intasome bound to magnesium and the INSTI MK2048X-RAY DIFFRACTION2.6836enzyme,recombinase
193OYL|1|C+ 3OYL|1|DCrystal structure of the PFV S217H mutant intasome bound to magnesium and the INSTI MK2048X-RAY DIFFRACTION2.5436enzyme,recombinase
203L2V|1|C+ 3L2V|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)X-RAY DIFFRACTION3.236enzyme,recombinase
213L2U|1|C+ 3L2U|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir)X-RAY DIFFRACTION3.1536enzyme,recombinase
223L2W|1|C+ 3L2W|1|DCrystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir)X-RAY DIFFRACTION3.236enzyme,recombinase
233OYM|1|C+ 3OYM|1|DCrystal structure of the PFV N224H mutant intasome bound to manganeseX-RAY DIFFRACTION2.0236enzyme,recombinase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4213 s