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Equivalence class DNA_3.0_03402.2 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
12W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|H (rep)5'-D(*AP*AP*TP*GP*TP*TP*TP*AP*GP*CP *TP*AP*AP*AP*CP*AP*AP*G)-3', 5'-D(*CP*BRUP*BRUP*GP*TP*TP*TP*AP*GP*CP*TP*AP *AP*AP*CP*AP*BRUP*T)-3'Escherichia coliCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-ray diffraction1.85722009-02-17
23BSE|1|A+ 3BSE|1|BDNA (5'-D(*DA*DCP*DAP*DCP*DTP*DAP*DCP*DAP*DAP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DAP*DT)-3'), DNA (5'-D(*DG*DTP*DAP*DTP*DTP*DGP*DCP*DAP*DAP*DCP*DAP*DTP*DTP*DGP*DTP*DAP*DGP*DT)-3')Crystal structure analysis of a 16-base-pair B-DNAX-ray diffraction1.6342008-12-23
33NCI|1|T+ 3NCI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-ray diffraction1.79312011-02-02
41JX4|1|T+ 1JX4|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*TP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-ray diffraction1.7302001-10-05
53NGI|1|T+ 3NGI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction1.886312011-01-26
63NDK|1|T+ 3NDK|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction2312011-01-26
73NAE|1|T+ 3NAE|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*(G35)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite GuanidinohydantoinX-ray diffraction2.003312010-09-15
83DVO|1|E+ 3DVO|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.892362008-08-19
93DVO|1|G+ 3DVO|1|HDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')synthetic constructSgrAI with cognate DNA and calcium boundX-ray diffraction1.892362008-08-19
103DW9|1|E+ 3DW9|1|FDNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3')SgrAI with cognate DNA and manganese boundX-ray diffraction2.2362008-08-19
111S9F|1|K+ 1S9F|1|G5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
123NE6|1|T+ 3NE6|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dGX-ray diffraction2.001312011-01-26
131B3T|1|C+ 1B3T|1|DDNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*AP*TP*AP*TP*GP*CP*TP*TP*CP*CP*C)-3')EBNA-1 NUCLEAR PROTEIN/DNA COMPLEXX-ray diffraction2.2361998-12-15
141S9F|1|L+ 1S9F|1|H5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
153CFP|1|T+ 3CFP|1|PDNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*(DOC))-3')Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1X-ray diffraction2.5322009-03-10
161S9F|1|J+ 1S9F|1|F5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
172OG0|1|C+ 2OG0|1|D5'-D(*AP*AP*AP*CP*AP*GP*AP*CP*TP*AP*CP*AP*TP*AP*AP*TP*AP*C)-3', 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-3'Crystal Structure of the Lambda Xis-DNA complexX-ray diffraction1.9362007-03-13
181S9F|1|I+ 1S9F|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*A)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO with AT matchedX-ray diffraction2302005-02-15
192JEJ|1|T+ 2JEJ|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*CP*G)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction1.86332007-03-13
203K57|1|T+ 3K57|1|PDNA (5'-D(*G*TP*AP*TP*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*G)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3')Crystal structure of E.coli Pol II-normal DNA-dATP ternary complexX-ray diffraction2.08302010-02-09
213NHG|1|T+ 3NHG|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dGX-ray diffraction2.5312011-01-26
221P8K|1|A+ 1P8K|1|C+ 1P8K|1|D+ 1P8K|1|B5'-D(P*CP*CP*TP*CP*CP*TP*CP*AP*GP*CP*GP*CP*GP*CP*T)-3', 5'-D(P*GP*CP*GP*CP*GP*CP*TP*GP*AP*GP*GP*AP*GP*GP*TP*TP*TP*C)-3', 5'-D(P*GP*CP*GP*CP*TP*TP*TP*AP*CP*AP*GP*AP*GP*AP*AP*A)-3', 5'-D(P*TP*CP*TP*GP*TP*AP*AP*AP*GP*CP*GP*CP*A)-3'The structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factorX-ray diffraction2.6622004-01-20
231RYS|1|F+ 1RYS|1|E5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-ray diffraction2.03312004-02-10
243M9O|1|T+ 3M9O|1|PDNA (5'-D(*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction2312010-06-16
251WB9|1|E+ 1WB9|1|F5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3'Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatchX-ray diffraction2.1352006-01-18
262P5L|1|A+ 2P5L|1|BDNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3')Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-ray diffraction2.85362008-03-11
273L8B|1|E+ 3L8B|1|FDNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3')Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-ray diffraction2.15292010-03-09
282P5L|1|E+ 2P5L|1|FDNA (5'-D(*DCP*DAP*DTP*DGP*DAP*DAP*DTP*DAP*DAP*DAP*DAP*DAP*DTP*DTP*DCP*DAP*DAP*DG)-3'), DNA (5'-D(*DCP*DTP*DTP*DGP*DAP*DAP*DTP*DTP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DG)-3')Crystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-ray diffraction2.85352008-03-11
291KB6|1|C+ 1KB6|1|D5'-D(*CP*AP*CP*GP*GP*GP*TP*GP*AP*AP*TP*GP*AP*GP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*CP*TP*CP*AP*TP*TP*CP*AP*CP*CP*CP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response ElementX-ray diffraction2.7362002-05-03
302BQR|1|T+ 2BQR|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.37302005-06-23
312DTU|1|I+ 2DTU|1|J5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
321RYS|1|D+ 1RYS|1|C5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*A)-3', 5'-D(*TP*CP*TP*TP*TP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-ray diffraction2.03312004-02-10
333CFR|1|T+ 3CFR|1|PDNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*(DOC))-3'), DNA (5'-D(*DTP*DCP*DAP*DAP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3')Structure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2X-ray diffraction2.4312009-03-10
342BNW|1|E+ 2BNW|1|F5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-ray diffraction2.45362006-03-15
351R0O|1|C+ 1R0O|1|DEcdysone Response ElementCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding ComplexX-ray diffraction2.24362003-10-21
361KB4|1|C+ 1KB4|1|D5'-D(*CP*AP*CP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*A)-3', 5'-D(*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response ElementX-ray diffraction2.8362002-05-03
373LZI|1|T+ 3LZI|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanineX-ray diffraction2.3312010-05-12
381IG9|1|T+ 1IG9|1|P5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*(DOC))-3'Structure of the Replicating Complex of a Pol Alpha Family DNA PolymeraseX-ray diffraction2.6322001-06-11
392R8H|1|T+ 2R8H|1|PDNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3'), DNA (5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3')Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-ray diffraction2.48312008-07-22
401KB2|1|C+ 1KB2|1|D5'-D(*CP*AP*CP*GP*GP*TP*TP*CP*AP*CP*GP*AP*GP*GP*TP*TP*CP*A)-3', 5'-D(*TP*GP*AP*AP*CP*CP*TP*CP*GP*TP*GP*AP*AP*CP*CP*GP*TP*G)-3'Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response ElementX-ray diffraction2.7362002-05-03
412R8I|1|T+ 2R8I|1|PDNA (5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DC)-3'), DNA (5'-D(*DTP*DCP*DAP*DTP*(P)P*DGP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3')Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-ray diffraction2.38312008-07-22
422BQU|1|T+ 2BQU|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.5302005-06-23
433PR5|1|T+ 3PR5|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Dpo4 Y12A mutant incorporating ADP opposite template dTX-ray diffraction2.4282011-02-23
443FBD|1|E+ 3FBD|1|F5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3'Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-ray diffraction2.9362009-11-03
453L8B|1|C+ 3L8B|1|DDNA (5'-D(*AP*C*TP*(G35)P*TP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*A)-3')Crystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-ray diffraction2.15292010-03-09
462W9A|1|T+ 2W9A|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPX-ray diffraction2.6302009-05-12
472BNZ|1|E+ 2BNZ|1|F5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-ray diffraction2.6352006-03-15
482UVV|1|T+ 2UVV|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.2302007-05-08
492UVW|1|T+ 2UVW|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.09312007-05-08
503OSN|1|B+ 3OSN|1|C5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-ray diffraction1.9152010-10-20
511S97|1|I+ 1S97|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
522JEF|1|T+ 2JEF|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*BZGP*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.17302007-03-13
532BQ3|1|T+ 2BQ3|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2312005-06-22
543CQ8|1|T+ 3CQ8|1|PDNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*DC)-3')Ternary complex of the L415F mutant RB69 exo(-)polymeraseX-ray diffraction2.5322008-09-02
552IVH|1|B+ 2IVH|1|C5'-D(*GP*GP*AP*AP*TP*TP*CP*GP*AP*TP *CP*GP*AP*AP*TP*TP*CP*C)-3'Escherichia coliCrystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNAX-ray diffraction2.8362007-01-02
563M9N|1|T+ 3M9N|1|PDNA (5'-D(*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')synthetic constructCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction1.93282010-06-16
572XCA|1|T+ 2XCA|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP*TP*CP* CP*CP*CP*C)-3'synthetic constructTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORMX-ray diffraction2.5302010-09-08
582W9B|1|E+ 2W9B|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-ray diffraction2.28302009-05-12
592JEI|1|T+ 2JEI|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.39302007-03-13
602V4Q|1|T+ 2V4Q|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'POST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNAX-ray diffraction2.6312009-06-16
611R0N|1|C+ 1R0N|1|DEcdsyone Response Element, Ecdysone Response ElementCrystal Structure of Heterodimeric Ecdsyone receptor DNA binding complexX-ray diffraction2.6362003-10-21
622C22|1|T+ 2C22|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.56302005-11-29
633FBD|1|B+ 3FBD|1|C5'-D(*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DGP*DAP*DTP*DCP*DGP*DAP*DAP*DTP*DTP*DCP*DC)-3'Crystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-ray diffraction2.9362009-11-03
642OZS|1|T+ 2OZS|1|PPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMPX-ray diffraction2.75322007-10-23
652VA2|1|D+ 2VA2|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.8292007-10-30
661Q9Y|1|T+ 1Q9Y|1|P5'-AC(8-OXOGUANOSINE)GGTAAGCAGTCCGCG-3', 5'-GCGGACTGCTTAC(DIDEOXYCYTIDINE)-3'CRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNAX-ray diffraction2.8322004-04-27
672DTU|1|G+ 2DTU|1|H5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
681S97|1|J+ 1S97|1|F5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
692V4R|1|T+ 2V4R|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'synthetic constructNon-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosineX-ray diffraction2.5302009-06-16
703PR4|1|T+ 3PR4|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*C)-3'), DNA (5'-D(*TP*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')Dpo4 Y12A mutant incorporating dADP opposite template dTX-ray diffraction2.65282011-02-23
713GIL|1|E+ 3GIL|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-ray diffraction2.71312009-05-19
721WBB|1|E+ 1WBB|1|F5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3'Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatchX-ray diffraction2.5352006-01-18
731WBD|1|E+ 1WBD|1|F5'-D(*AP*CP*TP*GP*GP*TP*GP*CP*TP*TP *GP*GP*CP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP *CP*AP*CP*CP*AP*GP*TP*G)-3'Crystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatchX-ray diffraction2.4352006-01-18
742XC9|1|T+ 2XC9|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*CP*G)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP*TP*TP* CP*CP*CP*CP*C)-3'synthetic constructBINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORMX-ray diffraction2.2312010-09-08
752JEG|1|T+ 2JEG|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*C BZGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'The Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-ray diffraction2.38312007-03-13
763MKZ|1|C+ 3MKZ|1|DDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-272)-18mer complex, P21 formX-ray diffraction2.98362010-05-05
771S97|1|K+ 1S97|1|G5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
782VA2|1|F+ 2VA2|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.8312007-10-30
793MKZ|1|Y+ 3MKZ|1|ZDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-272)-18mer complex, P21 formX-ray diffraction2.98362010-05-05
802W9B|1|F+ 2W9B|1|D5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-ray diffraction2.28302009-05-12
812UVU|1|T+ 2UVU|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.7312007-05-08
822J6T|1|T+ 2J6T|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-ray diffraction2.6302006-11-22
832BR0|1|T+ 2BR0|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-ray diffraction2.17302005-06-23
841Q9X|1|G+ 1Q9X|1|K5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
851S97|1|L+ 1S97|1|H5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*CP*TP*G)-3', 5'-D(*T*TP*CP*AP*GP*TP*AP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'DPO4 with GT mismatchX-ray diffraction2.4302004-04-27
862J6U|1|T+ 2J6U|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C G32P*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'synthetic constructTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.X-ray diffraction2.5312006-11-22
872DTU|1|E+ 2DTU|1|F5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
882XCP|1|F+ 2XCP|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-ray diffraction2.6312010-09-08
892XCP|1|T+ 2XCP|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP *TP*DOC)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-ray diffraction2.6312010-09-08
902DY4|1|G+ 2DY4|1|H5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65332007-01-09
913K5L|1|T+ 3K5L|1|PDNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*TP*AP*TP*(3DR)P*GP*TP*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3')Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complexX-ray diffraction2.7312010-02-02
922NL8|1|W18-nt PEN element of the SV40 DNA originThe origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)X-ray diffraction2.3182006-12-12
933MKW|1|T+ 3MKW|1|UDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of sopB(155-272)-18mer complex, I23 formX-ray diffraction2.99362010-05-05
942DY4|1|I+ 2DY4|1|J5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65332007-01-09
952UVR|1|T+ 2UVR|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-ray diffraction2.9312007-05-08
961Q9X|1|H+ 1Q9X|1|L5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
972J6S|1|T+ 2J6S|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-ray diffraction2.5302006-11-22
983MKY|1|T+ 3MKY|1|UDNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')Structure of SopB(155-323)-18mer DNA complex, I23 formX-ray diffraction2.86362010-05-05
992OZM|1|T+ 2OZM|1|PPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analogX-ray diffraction2.86322007-10-23
1003GIJ|1|E+ 3GIJ|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-ray diffraction2.4312009-05-19
1012C2D|1|T+ 2C2D|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'synthetic constructEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.57282005-11-29
1022C28|1|T+ 2C28|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP*TP *TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.27302005-11-29
1033LDS|1|T+ 3LDS|1|PDNA (5'-D(*CP*AP*(8OG)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*(DDG))-3')Crystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoGX-ray diffraction3322010-06-02
1043EPG|1|B+ 3EPG|1|C5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanineX-ray diffraction2.5152008-12-16
1052P5O|1|I+ 2P5O|1|JPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8332007-04-03
1061BF5|1|B+ 1BF5|1|CDNA (5'-D(*AP*CP*AP*GP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*G P*C)-3'), DNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*AP*CP*GP*GP*GP*AP*AP*AP*CP*T P*G)-3')Homo sapiensTYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-ray diffraction2.9361998-08-12
1072C2R|1|T+ 2C2R|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.55302005-11-29
1081YNW|1|C+ 1YNW|1|D5'-d(*TP*TP*AP*GP*GP*TP*CP*AP*CP*GP*AP*AP*GP*GP*TP*CP*AP*A)-3', 5'-d(*TP*TP*TP*GP*AP*CP*CP*TP*TP*CP*GP*TP*GP*AP*CP*CP*TP*A)-3'Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response ElementX-ray diffraction3362005-02-15
1092C2E|1|T+ 2C2E|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C 8OGP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-ray diffraction2.61292005-11-29
1103GIM|1|E+ 3GIM|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DDG))-3'Dpo4 extension ternary complex with oxoG(anti)-G(syn) pairX-ray diffraction2.7312009-05-19
1111RM1|1|D+ 1RM1|1|E5'-D(*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*AP*TP*AP*AP*AP*AP*CP*G)-3', 5'-D(P*CP*GP*TP*TP*TP*TP*AP*TP*AP*TP*CP*GP*AP*TP*CP*GP*AP*T)-3'Structure of a Yeast TFIIA/TBP/TATA-box DNA ComplexX-ray diffraction2.5362005-07-26
1122W9C|1|E+ 2W9C|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-ray diffraction2.9292009-05-12
1131S0N|1|T+ 1S0N|1|P5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*AP*CP*G)-3', 5'-D(*TP*AP*CP*GP*AP*CP*GP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3'Snapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-ray diffraction2.8312004-03-30
1141Q9X|1|F+ 1Q9X|1|J5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
1153NGD|1|C+ 3NGD|1|D5'-D(*TP*CP*TP*(6OG)P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'Structural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase IotaX-ray diffraction2.8152010-10-20
1163GIK|1|E+ 3GIK|1|D5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'Dpo4 extension ternary complex with the oxoG(anti)-C(anti) pairX-ray diffraction2.9312009-05-19
1172W8L|1|T+ 2W8L|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationX-ray diffraction3302009-01-27
1182W9C|1|F+ 2W9C|1|D5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-ray diffraction2.9292009-05-12
1192V9W|1|F+ 2V9W|1|E5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction3292007-10-30
1202DTU|1|K+ 2DTU|1|L5'-D(*CP*GP*(3DR)P*CP*TP*TP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*AP*AP*GP*A)-3'Crystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-ray diffraction2.37332006-12-05
1212VA3|1|T+ 2VA3|1|P5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*A)-3', 5'-D(*TP*TP*CP*AP*DFTP*TP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction2.98292007-10-30
1222V9W|1|D+ 2V9W|1|C5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3', 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3'Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-ray diffraction3312007-10-30
1233GIJ|1|J+ 3GIJ|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-ray diffraction2.4272009-05-19
1241H0M|1|G+ 1H0M|1|H5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3'synthetic constructThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-ray diffraction3362002-08-29
1251Q9X|1|E+ 1Q9X|1|I5'-AC(tetrahydrofuran)GGTAAGCAGTCCGCGG-3', 5'-GCGGACTGCTTAC(dideoxycytidine)-3'Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-ray diffraction2.69312004-04-27
1263GIL|1|J+ 3GIL|1|H5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DT))-3'Dpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-ray diffraction2.71292009-05-19
1271H0M|1|E+ 1H0M|1|F5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3'synthetic constructThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-ray diffraction3362002-08-29
1282P5O|1|E+ 2P5O|1|FPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8332007-04-03
1292DY4|1|E+ 2DY4|1|F5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65312007-01-09
1302BNW|1|G+ 2BNW|1|H5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-ray diffraction2.45362006-03-15
1312DY4|1|K+ 2DY4|1|L5'-D(*CP*GP*(CTG)P*GP*GP*AP*AP*TP*GP*A*CP*AP*GP*CP*CP*GP*CP*G)-3', 5'-D(*GP*CP*GP*GP*CP*TP*GP*T*CP*AP*TP*TP*CP*CP*A)-3'Crystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-ray diffraction2.65332007-01-09
1323EPI|1|B+ 3EPI|1|C5'-D(*DTP*DCP*DTP*(2EG)P*DGP*DGP*DGP*DTP*DCP*DCP*DTP*DAP*DGP*DGP*DAP*DCP*DCP*(DOC))-3'Structure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTPX-ray diffraction2.9152008-12-16
1332P5O|1|G+ 2P5O|1|HPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8282007-04-03
1342BNZ|1|G5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*GP*AP*TP*TP*AP*GP*C)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-ray diffraction2.652006-03-15
1352BNZ|1|H5'-D(*CP*TP*AP*AP*TP*CP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3'synthetic constructStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-ray diffraction2.652006-03-15
1363M9M|1|T+ 3M9M|1|PDNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*TP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')synthetic constructCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-ray diffraction2.9282010-06-16
1372P5O|1|K+ 2P5O|1|LPrimer DNA, Template DNACrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-ray diffraction2.8172007-04-03
1383G6P|1|C+ 3G6P|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex, 18bpX-ray diffraction1.985362009-04-21
1393G9J|1|C+ 3G9J|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:Pal, 18bp complex-36X-ray diffraction2.32362009-04-21
1403G6R|1|C+ 3G6R|1|DDNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3')GR DNA binding domain:FKBP5 complex-52, 18bpX-ray diffraction2.3362009-04-21
1412CAX|1|U+ 2CAX|1|Y5'-D(*CP*TP*TP*GP*TP*GP*AP*CP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*GP *TP*CP*AP*CP*AP*AP*GP*C)-3'STRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATSX-ray diffraction2.9362006-03-15
1423LZJ|1|T+ 3LZJ|1|PDNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3'), DNA (5'-D(P*TP*CP*AP*(8OG)P*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3')RB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanineX-ray diffraction2.05312010-05-19
1432NLL|1|C+ 2NLL|1|DDNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*TP*TP*(5IU)P*CP*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*GP*AP*AP*AP*TP*GP*AP*CP*CP*T P*G)-3')RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-ray diffraction1.9361997-03-12
1441NLW|1|F+ 1NLW|1|G5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction2362003-02-04
1451NLW|1|H+ 1NLW|1|J5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3'Crystal structure of Mad-Max recognizing DNAX-ray diffraction2362003-02-04
1462C7A|1|C+ 2C7A|1|D5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*AP*AP *CP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*TP *TP*TP*GP*TP*TP*CP*TP*G)-3'Homo sapiensSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEXX-ray diffraction2.5362006-08-30
1471HCQ|1|C+ 1HCQ|1|DDNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3')THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-ray diffraction2.4361995-11-23
1481HCQ|1|G+ 1HCQ|1|HDNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP*CP*CP*T P*G)-3'), DNA (5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP*CP*CP*T P*G)-3')THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-ray diffraction2.4361995-11-23
1491H38|1|H+ 1H38|1|I+ 1H38|1|J5'-D(*GP*GP*GP*AP*AP*TP*CP*GP*AP*CP *AP*TP*CP*GP*CP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*CP)-3', 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3'Escherichia virus T7Structure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-ray diffraction2.9352002-11-20
1501DCT|1|F+ 1DCT|1|MDNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3')DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-ray diffraction2.8361995-09-15
1511DCT|1|G+ 1DCT|1|NDNA (5'-D(*AP*CP*CP*AP*GP*CP*AP*GP*GP*(C49)P*CP*AP*CP*CP*AP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*TP*GP*GP*(C5M)P*CP*TP*GP*CP*TP*GP*G)-3')DNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-ray diffraction2.8331995-09-15
1521H38|1|N+ 1H38|1|O+ 1H38|1|P5'-D(*GP*GP*GP*AP*AP*TP*CP*GP*AP*CP *AP*TP*CP*GP*CP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*CP)-3', 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3'Escherichia virus T7Structure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-ray diffraction2.9342002-11-20
1531H38|1|E+ 1H38|1|F+ 1H38|1|G5'-D(*GP*GP*GP*AP*AP*TP*CP*GP*AP*CP *AP*TP*CP*GP*CP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*CP)-3', 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3'Escherichia virus T7Structure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-ray diffraction2.9342002-11-20
1541BG1|1|BDNA (5'-D(*TP*GP*CP*AP*TP*TP*TP*CP*CP*CP*GP*TP*AP*AP*AP*TP*CP*T)-3')TRANSCRIPTION FACTOR STAT3B/DNA COMPLEXX-ray diffraction2.25181999-01-13
1551H38|1|K+ 1H38|1|L+ 1H38|1|M5'-D(*GP*GP*GP*AP*AP*TP*CP*GP*AP*CP *AP*TP*CP*GP*CP*CP*GP*C)-3', 5'-D(*GP*TP*CP*GP*AP*TP*TP*CP*CP*CP)-3', 5'-R(*AP*AP*CP*UP*GP*CP*GP*GP*CP*GP *AP*U)-3'Escherichia virus T7Structure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-ray diffraction2.9342002-11-20

Release history

Release0.6
Date2011-03-05

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTsNAKB NA annotationNAKB protein annotation
13M9O|1|T+ 3M9O|1|PCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION231enzyme,polymerase,transferase
21RM1|1|D+ 1RM1|1|EStructure of a Yeast TFIIA/TBP/TATA-box DNA ComplexX-RAY DIFFRACTION2.536double helix,structureβ-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription
31WBD|1|E+ 1WBD|1|FCrystal structure of E. coli DNA mismatch repair enzyme MutS, E38Q mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.435B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
41WB9|1|E+ 1WB9|1|FCrystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.135B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
51WBB|1|E+ 1WBB|1|FCrystal structure of E. coli DNA mismatch repair enzyme MutS, E38A mutant, in complex with a G.T mismatchX-RAY DIFFRACTION2.535B-form double helix,double helix,feature,mispair,structureDNA replication/repair,regulatory
62IVH|1|B+ 2IVH|1|CCrystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNAX-RAY DIFFRACTION2.836B-form double helix,double helix,structureenzyme,hydrolase,nuclease
73FBD|1|E+ 3FBD|1|FCrystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-RAY DIFFRACTION2.936B-form double helix,double helix,structureenzyme,hydrolase,nuclease
83FBD|1|B+ 3FBD|1|CCrystal structure of the nuclease domain of COLE7(D493Q mutant) in complex with an 18-BP duplex DNAX-RAY DIFFRACTION2.936B-form double helix,double helix,structureenzyme,hydrolase,nuclease
92P5O|1|K+ 2P5O|1|LCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.817B-form double helix,double helix,structureenzyme,polymerase,transferase
102DTU|1|K+ 2DTU|1|LCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
112DTU|1|I+ 2DTU|1|JCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
122DTU|1|E+ 2DTU|1|FCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
132DTU|1|G+ 2DTU|1|HCrystal structure of the beta hairpin loop deletion variant of RB69 gp43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.3733B-form double helix,double helix,structureenzyme,polymerase,transferase
142P5O|1|G+ 2P5O|1|HCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.828B-form double helix,double helix,structureenzyme,polymerase,transferase
152DY4|1|E+ 2DY4|1|FCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6531enzyme,polymerase,transferase
162DY4|1|I+ 2DY4|1|JCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6533enzyme,polymerase,transferase
172DY4|1|G+ 2DY4|1|HCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6533enzyme,polymerase,transferase
182DY4|1|K+ 2DY4|1|LCrystal structure of RB69 GP43 in complex with DNA containing Thymine GlycolX-RAY DIFFRACTION2.6533enzyme,polymerase,transferase
192P5O|1|E+ 2P5O|1|FCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.833B-form double helix,double helix,structureenzyme,polymerase,transferase
202P5O|1|I+ 2P5O|1|JCrystal structure of RB69 GP43 in complex with DNA containing an abasic site analogX-RAY DIFFRACTION2.833B-form double helix,double helix,structureenzyme,polymerase,transferase
213LDS|1|T+ 3LDS|1|PCrystal structure of RB69 gp43 with DNA and dATP opposite 8-oxoGX-RAY DIFFRACTION332B-form double helix,double helix,structureenzyme,polymerase,transferase
221Q9X|1|E+ 1Q9X|1|ICrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
231Q9X|1|F+ 1Q9X|1|JCrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
241Q9X|1|G+ 1Q9X|1|KCrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
251Q9X|1|H+ 1Q9X|1|LCrystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNAX-RAY DIFFRACTION2.6931double helix,structureenzyme,polymerase,transferase
263CFP|1|T+ 3CFP|1|PStructure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 1X-RAY DIFFRACTION2.532B-form double helix,double helix,structureenzyme,polymerase,transferase
271Q9Y|1|T+ 1Q9Y|1|PCRYSTAL STRUCTURE OF ENTEROBACTERIA PHAGE RB69 GP43 DNA POLYMERASE COMPLEXED WITH 8-OXOGUANOSINE CONTAINING DNAX-RAY DIFFRACTION2.832B-form double helix,double helix,structureenzyme,polymerase,transferase
281IG9|1|T+ 1IG9|1|PStructure of the Replicating Complex of a Pol Alpha Family DNA PolymeraseX-RAY DIFFRACTION2.632B-form double helix,double helix,structureenzyme,polymerase,transferase
293CQ8|1|T+ 3CQ8|1|PTernary complex of the L415F mutant RB69 exo(-)polymeraseX-RAY DIFFRACTION2.532B-form double helix,double helix,structureenzyme,polymerase,transferase
302OZS|1|T+ 2OZS|1|PCrystal structure of RB69 gp43 in complex with DNA with dATP opposite dTMPX-RAY DIFFRACTION2.7532B-form double helix,double helix,structureenzyme,polymerase,transferase
312OZM|1|T+ 2OZM|1|PCrystal structure of RB69 gp43 in complex with DNA with 5-NITP opposite an abasic site analogX-RAY DIFFRACTION2.8632double helix,structureenzyme,polymerase,transferase
323L8B|1|E+ 3L8B|1|FCrystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-RAY DIFFRACTION2.1529B-form double helix,double helix,structureenzyme,polymerase,transferase
333L8B|1|C+ 3L8B|1|DCrystal structure of a replicative DNA polymerase bound to the oxidized guanine lesion guanidinohydantoinX-RAY DIFFRACTION2.1529B-form double helix,double helix,structureenzyme,polymerase,transferase
343LZJ|1|T+ 3LZJ|1|PRB69 DNA Polymerase (Y567A) ternary complex with dCTP Opposite 7,8-Dihydro-8-oxoguanineX-RAY DIFFRACTION2.0531B-form double helix,double helix,structureenzyme,polymerase,transferase
353LZI|1|T+ 3LZI|1|PRB69 DNA Polymerase (Y567A) ternary complex with dATP Opposite 7,8-dihydro-8-oxoguanineX-RAY DIFFRACTION2.331B-form double helix,double helix,structureenzyme,polymerase,transferase
363M9N|1|T+ 3M9N|1|PCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION1.9328B-form double helix,double helix,structureenzyme,polymerase,transferase
371RYS|1|F+ 1RYS|1|EREPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-RAY DIFFRACTION2.0331B-form double helix,double helix,structureenzyme,polymerase,transferase
381RYS|1|D+ 1RYS|1|CREPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTIONX-RAY DIFFRACTION2.0331B-form double helix,double helix,structureenzyme,polymerase,transferase
391S0N|1|T+ 1S0N|1|PSnapshots of replication through an abasic lesion: structural basis for base substitution and frameshiftX-RAY DIFFRACTION2.831double helix,structureenzyme,polymerase,transferase
402UVR|1|T+ 2UVR|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.931B-form double helix,double helix,structureenzyme,polymerase,transferase
412JEG|1|T+ 2JEG|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.3831B-form double helix,double helix,structureenzyme,polymerase,transferase
422UVV|1|T+ 2UVV|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.230B-form double helix,double helix,structureenzyme,polymerase,transferase
432JEJ|1|T+ 2JEJ|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION1.8633enzyme,polymerase,transferase
442JEI|1|T+ 2JEI|1|PThe Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state Kinetics and X- Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.3930B-form double helix,double helix,structureenzyme,polymerase,transferase
452J6U|1|T+ 2J6U|1|PTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP.X-RAY DIFFRACTION2.531B-form double helix,double helix,structureenzyme,polymerase,transferase
462VA3|1|T+ 2VA3|1|PComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.9829B-form double helix,double helix,structureenzyme,polymerase,transferase
472BQ3|1|T+ 2BQ3|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION231B-form double helix,double helix,structureenzyme,polymerase,transferase
482BQU|1|T+ 2BQU|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
492BQR|1|T+ 2BQR|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.3730B-form double helix,double helix,structureenzyme,polymerase,transferase
502J6T|1|T+ 2J6T|1|PTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-RAY DIFFRACTION2.630B-form double helix,double helix,structureenzyme,polymerase,transferase
512XCA|1|T+ 2XCA|1|PTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dGTP - MAGNESIUM FORMX-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
522C28|1|T+ 2C28|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.2730B-form double helix,double helix,structureenzyme,polymerase,transferase
532BR0|1|T+ 2BR0|1|PDNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-EthenoguanineX-RAY DIFFRACTION2.1730B-form double helix,double helix,structureenzyme,polymerase,transferase
542JEF|1|T+ 2JEF|1|PThe Molecular Basis of Selectivity of Nucleotide Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus solfataricus DNA Polymerase IV: Steady-state and Pre-steady-state and X-Ray Crystallography of Correct and Incorrect PairingX-RAY DIFFRACTION2.1730B-form double helix,double helix,structureenzyme,polymerase,transferase
552W8L|1|T+ 2W8L|1|PY-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in anti orientationX-RAY DIFFRACTION330B-form double helix,double helix,structureenzyme,polymerase,transferase
562W9A|1|T+ 2W9A|1|PTernary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTPX-RAY DIFFRACTION2.630B-form double helix,double helix,structureenzyme,polymerase,transferase
572V4R|1|T+ 2V4R|1|PNon-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosineX-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
582C22|1|T+ 2C22|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5630B-form double helix,double helix,structureenzyme,polymerase,transferase
592J6S|1|T+ 2J6S|1|PTernary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.X-RAY DIFFRACTION2.530B-form double helix,double helix,structureenzyme,polymerase,transferase
602R8H|1|T+ 2R8H|1|PSelectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-RAY DIFFRACTION2.4831B-form double helix,double helix,structureenzyme,polymerase,transferase
612R8I|1|T+ 2R8I|1|PSelectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 PolymeraseX-RAY DIFFRACTION2.3831B-form double helix,double helix,structureenzyme,polymerase,transferase
622V4Q|1|T+ 2V4Q|1|PPOST-INSERTION COMPLEX OF THE Y-FAMILY DNA POLYMERASE DPO4 WITH M1DG CONTAINING TEMPLATE DNAX-RAY DIFFRACTION2.631B-form double helix,double helix,structureenzyme,polymerase,transferase
632UVW|1|T+ 2UVW|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.0931B-form double helix,double helix,structureenzyme,polymerase,transferase
642UVU|1|T+ 2UVU|1|PCrystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructsX-RAY DIFFRACTION2.731B-form double helix,double helix,structureenzyme,polymerase,transferase
653CFR|1|T+ 3CFR|1|PStructure of the replicating complex of a POL Alpha family DNA Polymerase, ternary complex 2X-RAY DIFFRACTION2.431B-form double helix,double helix,structureenzyme,polymerase,transferase
663NCI|1|T+ 3NCI|1|PRB69 DNA Polymerase Ternary Complex with dCTP Opposite dG at 1.8 angstrom resolutionX-RAY DIFFRACTION1.7931B-form double helix,double helix,structureenzyme,polymerase,transferase
673NDK|1|T+ 3NDK|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION231B-form double helix,double helix,structureenzyme,polymerase,transferase
683NAE|1|T+ 3NAE|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dATP Opposite GuanidinohydantoinX-RAY DIFFRACTION2.00331B-form double helix,double helix,structureenzyme,polymerase,transferase
693NGI|1|T+ 3NGI|1|PRB69 DNA Polymerase (Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION1.88631B-form double helix,double helix,structureenzyme,polymerase,transferase
703NE6|1|T+ 3NE6|1|PRB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dCTP Opposite dGX-RAY DIFFRACTION2.00131B-form double helix,double helix,structureenzyme,polymerase,transferase
713NHG|1|T+ 3NHG|1|PRB69 DNA Polymerase (S565G/Y567A) Ternary Complex with dTTP Opposite dGX-RAY DIFFRACTION2.531B-form double helix,double helix,structureenzyme,polymerase,transferase
723GIJ|1|J+ 3GIJ|1|HDpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-RAY DIFFRACTION2.427B-form double helix,double helix,structureenzyme,polymerase,transferase
733GIJ|1|E+ 3GIJ|1|DDpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairsX-RAY DIFFRACTION2.431B-form double helix,double helix,structureenzyme,polymerase,transferase
743GIL|1|E+ 3GIL|1|DDpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-RAY DIFFRACTION2.7131B-form double helix,double helix,structureenzyme,polymerase,transferase
753GIM|1|E+ 3GIM|1|DDpo4 extension ternary complex with oxoG(anti)-G(syn) pairX-RAY DIFFRACTION2.731B-form double helix,double helix,structureenzyme,polymerase,transferase
763GIK|1|E+ 3GIK|1|DDpo4 extension ternary complex with the oxoG(anti)-C(anti) pairX-RAY DIFFRACTION2.931B-form double helix,double helix,structureenzyme,polymerase,transferase
773GIL|1|J+ 3GIL|1|HDpo4 extension ternary complex with oxoG(anti)-T(anti) pairX-RAY DIFFRACTION2.7129B-form double helix,double helix,structureenzyme,polymerase,transferase
781S9F|1|K+ 1S9F|1|GDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
791S97|1|K+ 1S97|1|GDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
801S9F|1|J+ 1S9F|1|FDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
811S97|1|J+ 1S97|1|FDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
821S97|1|I+ 1S97|1|EDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
831JX4|1|T+ 1JX4|1|PCrystal Structure of a Y-family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming NucleotideX-RAY DIFFRACTION1.730B-form double helix,double helix,structureenzyme,polymerase,transferase
841S9F|1|I+ 1S9F|1|EDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
851S97|1|L+ 1S97|1|HDPO4 with GT mismatchX-RAY DIFFRACTION2.430B-form double helix,double helix,structureenzyme,polymerase,transferase
861S9F|1|L+ 1S9F|1|HDPO with AT matchedX-RAY DIFFRACTION230B-form double helix,double helix,structureenzyme,polymerase,transferase
872VA2|1|F+ 2VA2|1|EComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.831B-form double helix,double helix,structureenzyme,polymerase,transferase
882VA2|1|D+ 2VA2|1|CComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION2.829B-form double helix,double helix,structureenzyme,polymerase,transferase
892XCP|1|T+ 2XCP|1|PTERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-RAY DIFFRACTION2.631B-form double helix,double helix,structureenzyme,polymerase,transferase
902XCP|1|F+ 2XCP|1|ETERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORMX-RAY DIFFRACTION2.631B-form double helix,double helix,structureenzyme,polymerase,transferase
912V9W|1|D+ 2V9W|1|CComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION331double helix,structureenzyme,polymerase,transferase
922V9W|1|F+ 2V9W|1|EComplex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strandX-RAY DIFFRACTION329double helix,structureenzyme,polymerase,transferase
933K5L|1|T+ 3K5L|1|PCrystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complexX-RAY DIFFRACTION2.731double helix,structureenzyme,polymerase,transferase
943K57|1|T+ 3K57|1|PCrystal structure of E.coli Pol II-normal DNA-dATP ternary complexX-RAY DIFFRACTION2.0830B-form double helix,double helix,structureenzyme,polymerase,transferase
953M9M|1|T+ 3M9M|1|PCrystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesionX-RAY DIFFRACTION2.928enzyme,polymerase,transferase
962W9C|1|F+ 2W9C|1|DTernary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-RAY DIFFRACTION2.929double helix,structureenzyme,polymerase,transferase
972W9C|1|E+ 2W9C|1|CTernary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTPX-RAY DIFFRACTION2.929double helix,structureenzyme,polymerase,transferase
982C2D|1|T+ 2C2D|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5728B-form double helix,double helix,structureenzyme,polymerase,transferase
992W9B|1|E+ 2W9B|1|CBinary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-RAY DIFFRACTION2.2830B-form double helix,double helix,structureenzyme,polymerase,transferase
1002C2R|1|T+ 2C2R|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.5530B-form double helix,double helix,structureenzyme,polymerase,transferase
1012C2E|1|T+ 2C2E|1|PEfficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4X-RAY DIFFRACTION2.6129B-form double helix,double helix,structureenzyme,polymerase,transferase
1022W9B|1|F+ 2W9B|1|DBinary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNAX-RAY DIFFRACTION2.2830B-form double helix,double helix,structureenzyme,polymerase,transferase
1032XC9|1|T+ 2XC9|1|PBINARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE AND 1, N2-ETHENOGUANINE MODIFIED DNA, MAGNESIUM FORMX-RAY DIFFRACTION2.231B-form double helix,double helix,structureenzyme,polymerase,transferase
1042P5L|1|A+ 2P5L|1|BCrystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-RAY DIFFRACTION2.8536B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1052P5L|1|E+ 2P5L|1|FCrystal structure of a dimer of N-terminal domains of AhrC in complex with an 18bp DNA operator siteX-RAY DIFFRACTION2.8535B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1062BNZ|1|HStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-RAY DIFFRACTION2.65DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1072W7N|1|E+ 2W7N|1|F+ 2W7N|1|G+ 2W7N|1|HCrystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene RegulationX-RAY DIFFRACTION1.8572B-form double helix,double helix,structureregulatory,transcription
1081NLW|1|H+ 1NLW|1|JCrystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION236B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
1091NLW|1|F+ 1NLW|1|GCrystal structure of Mad-Max recognizing DNAX-RAY DIFFRACTION236B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
1103MKZ|1|C+ 3MKZ|1|DStructure of SopB(155-272)-18mer complex, P21 formX-RAY DIFFRACTION2.9836B-form double helix,double helix,structureregulatory
1113MKZ|1|Y+ 3MKZ|1|ZStructure of SopB(155-272)-18mer complex, P21 formX-RAY DIFFRACTION2.9836B-form double helix,double helix,structureregulatory
1123MKY|1|T+ 3MKY|1|UStructure of SopB(155-323)-18mer DNA complex, I23 formX-RAY DIFFRACTION2.8636B-form double helix,double helix,structurecentromere,chromatin,structural
1133MKW|1|T+ 3MKW|1|UStructure of sopB(155-272)-18mer complex, I23 formX-RAY DIFFRACTION2.9936B-form double helix,double helix,structureregulatory
1141P8K|1|A+ 1P8K|1|C+ 1P8K|1|D+ 1P8K|1|BThe structure and DNA recognition of a bifunctional homing endonuclease and group I intron splicing factorX-RAY DIFFRACTION2.662B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1152OG0|1|C+ 2OG0|1|DCrystal Structure of the Lambda Xis-DNA complexX-RAY DIFFRACTION1.936B-form double helix,double helix,structureenzyme,recombinase
1161BF5|1|B+ 1BF5|1|CTYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEXX-RAY DIFFRACTION2.936double helix,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
1171BG1|1|BTRANSCRIPTION FACTOR STAT3B/DNA COMPLEXX-RAY DIFFRACTION2.2518B-form double helix,double helix,feature,mispair,structureDNA-binding transcription factor (TF),STAT,immunoglobulin (Ig) fold,regulatory,transcription
1183G9J|1|C+ 3G9J|1|DGR DNA binding domain:Pal, 18bp complex-36X-RAY DIFFRACTION2.3236B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1193G6R|1|C+ 3G6R|1|DGR DNA binding domain:FKBP5 complex-52, 18bpX-RAY DIFFRACTION2.336B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1202C7A|1|C+ 2C7A|1|DSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEXX-RAY DIFFRACTION2.536B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1213G6P|1|C+ 3G6P|1|DGR DNA binding domain:FKBP5 complex, 18bpX-RAY DIFFRACTION1.98536B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1221HCQ|1|C+ 1HCQ|1|DTHE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-RAY DIFFRACTION2.436B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1231HCQ|1|G+ 1HCQ|1|HTHE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTSX-RAY DIFFRACTION2.436B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1242NLL|1|C+ 2NLL|1|DRETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO THYROID RESPONSE ELEMENT DNAX-RAY DIFFRACTION1.936B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1252BNZ|1|E+ 2BNZ|1|FStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-RAY DIFFRACTION2.635DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1262CAX|1|U+ 2CAX|1|YSTRUCTURAL BASIS FOR COOPERATIVE BINDING OF RIBBON-HELIX-HELIX REPRESSOR OMEGA TO MUTATED DIRECT DNA HEPTAD REPEATSX-RAY DIFFRACTION2.936DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1272BNW|1|E+ 2BNW|1|FStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-RAY DIFFRACTION2.4536DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1282BNW|1|G+ 2BNW|1|HStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeatsX-RAY DIFFRACTION2.4536DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1293BSE|1|A+ 3BSE|1|BCrystal structure analysis of a 16-base-pair B-DNAX-RAY DIFFRACTION1.634B-form double helix,double helix,structure
1301YNW|1|C+ 1YNW|1|DCrystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response ElementX-RAY DIFFRACTION336B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1311KB6|1|C+ 1KB6|1|DCrystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response ElementX-RAY DIFFRACTION2.736B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1321KB4|1|C+ 1KB4|1|DCrystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response ElementX-RAY DIFFRACTION2.836B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1331KB2|1|C+ 1KB2|1|DCrystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response ElementX-RAY DIFFRACTION2.736B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1341R0N|1|C+ 1R0N|1|DCrystal Structure of Heterodimeric Ecdsyone receptor DNA binding complexX-RAY DIFFRACTION2.636B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1351R0O|1|C+ 1R0O|1|DCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding ComplexX-RAY DIFFRACTION2.2436B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
1362NL8|1|WThe origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)X-RAY DIFFRACTION2.318B-form double helix,double helix,feature,mispair,structureDNA replication/repair,enzyme,helicase,hydrolase,regulatory
1373DVO|1|G+ 3DVO|1|HSgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1383DVO|1|E+ 3DVO|1|FSgrAI with cognate DNA and calcium boundX-RAY DIFFRACTION1.89236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1393DW9|1|E+ 3DW9|1|FSgrAI with cognate DNA and manganese boundX-RAY DIFFRACTION2.236B-form double helix,double helix,structureenzyme,hydrolase,nuclease
1403EPI|1|B+ 3EPI|1|CStructure of Human DNA Polymerase Iota complexed with N2-ethylguanine and incoming TTPX-RAY DIFFRACTION2.915double helix,structureenzyme,polymerase,transferase
1411H0M|1|G+ 1H0M|1|HThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-RAY DIFFRACTION336B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1421H0M|1|E+ 1H0M|1|FThree-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNAX-RAY DIFFRACTION336B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
1431B3T|1|C+ 1B3T|1|DEBNA-1 NUCLEAR PROTEIN/DNA COMPLEXX-RAY DIFFRACTION2.236B-form double helix,double helix,structureregulatory,transcription
1443EPG|1|B+ 3EPG|1|CStructure of Human DNA Polymerase Iota complexed with N2-ethylguanineX-RAY DIFFRACTION2.515enzyme,polymerase,transferase
1453OSN|1|B+ 3OSN|1|CStructural Basis for Proficient Incorporation of dTTP Opposite O6-Methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION1.915enzyme,polymerase,transferase
1463NGD|1|C+ 3NGD|1|DStructural Basis for Proficient Incorporation of dTTP Opposite O6-methylguanine by Human DNA Polymerase IotaX-RAY DIFFRACTION2.815enzyme,polymerase,transferase
1471DCT|1|G+ 1DCT|1|NDNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-RAY DIFFRACTION2.833B-form double helix,double helix,structureenzyme,methylase,transferase
1481DCT|1|F+ 1DCT|1|MDNA (CYTOSINE-5) METHYLASE FROM HAEIII COVALENTLY BOUND TO DNAX-RAY DIFFRACTION2.836B-form double helix,double helix,structureenzyme,methylase,transferase
1492BNZ|1|GStructural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to inverted DNA heptad repeatsX-RAY DIFFRACTION2.65DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription
1503PR4|1|T+ 3PR4|1|PDpo4 Y12A mutant incorporating dADP opposite template dTX-RAY DIFFRACTION2.6528B-form double helix,double helix,structureenzyme,polymerase,transferase
1511H38|1|N+ 1H38|1|O+ 1H38|1|PStructure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-RAY DIFFRACTION2.934enzyme,polymerase,transferase
1523PR5|1|T+ 3PR5|1|PDpo4 Y12A mutant incorporating ADP opposite template dTX-RAY DIFFRACTION2.428B-form double helix,double helix,structureenzyme,polymerase,transferase
1531H38|1|E+ 1H38|1|F+ 1H38|1|GStructure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-RAY DIFFRACTION2.934enzyme,polymerase,transferase
1541H38|1|K+ 1H38|1|L+ 1H38|1|MStructure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-RAY DIFFRACTION2.934enzyme,polymerase,transferase
1551H38|1|H+ 1H38|1|I+ 1H38|1|JStructure of a T7 RNA polymerase elongation complex at 2.9A resolutionX-RAY DIFFRACTION2.935enzyme,polymerase,transferase

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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