Equivalence class DNA_3.0_69756.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2C9L|1|A+ 2C9L|1|B (rep) | 5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*CP *TP*CP*AP*TP*GP*AP*AP*GP*T)-3', 5'-D(*AP*CP*TP*TP*CP*AP*CP*TP*GP*AP *GP*TP*CP*AP*GP*TP*GP*CP*T)-3' | human gammaherpesvirus 4 | Structure of the Epstein-Barr virus ZEBRA protein | X-ray diffraction | 2.25 | 37 | 2006-02-21 | |||
| 2 | 2ASD|1|E+ 2ASD|1|D | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Insertion Ternary Complex | X-ray diffraction | 1.95 | 30 | 2006-01-10 | ||||
| 3 | 2ASD|1|J+ 2ASD|1|H | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Insertion Ternary Complex | X-ray diffraction | 1.95 | 32 | 2006-01-10 | ||||
| 4 | 3KMD|1|E+ 3KMD|1|F | 5'-D(*GP*GP*GP*CP*AP*TP*GP*CP*CP*TP*AP*GP*GP*CP*AP*TP*GP*CP*C)-3' | Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer | X-ray diffraction | 2.15 | 38 | 2010-02-23 | ||||
| 5 | 2ASJ|1|E+ 2ASJ|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Preinsertion Binary Complex | X-ray diffraction | 2.35 | 26 | 2006-01-10 | ||||
| 6 | 2ASJ|1|J+ 2ASJ|1|H | 5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | oxoG-modified Preinsertion Binary Complex | X-ray diffraction | 2.35 | 26 | 2006-01-10 | ||||
| 7 | 3K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|G | DNA (5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*T)-3'), DNA (5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*T)-3'), DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3'), DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3') | Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-ray diffraction | 2.9 | 36 | 2009-10-27 | ||||
| 8 | 1CRX|1|D+ 1CRX|1|E | DNA (5'-D(*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(P*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*GP*C)-3') | CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I | X-ray diffraction | 2.4 | 34 | 1998-10-14 | ||||
| 9 | 2R8G|1|T+ 2R8G|1|P | 5'-D(*DGP*DGP*DGP*DGP*DGP*DAP*DAP*DGP*DGP*DAP*DTP*DTP*DT)-3', 5'-D(*DTP*DCP*DAP*DCP*(P)P*DGP*DAP*DAP*DAP*DTP*DCP*DCP*DTP*DTP*DCP*DCP*DCP*DCP*DC)-3' | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-ray diffraction | 2.7 | 31 | 2008-07-22 | ||||
| 10 | 2H7H|1|X+ 2H7H|1|Y | 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3', 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3' | Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNA | X-ray diffraction | 2.3 | 38 | 2007-06-12 | ||||
| 11 | 3GII|1|E+ 3GII|1|D | 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation | X-ray diffraction | 2.6 | 31 | 2009-05-19 | ||||
| 12 | 2ASL|1|E+ 2ASL|1|D | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' | oxoG-modified Postinsertion Binary Complex | X-ray diffraction | 2.65 | 31 | 2006-01-10 | ||||
| 13 | 2ASL|1|J+ 2ASL|1|H | 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3' | oxoG-modified Postinsertion Binary Complex | X-ray diffraction | 2.65 | 31 | 2006-01-10 | ||||
| 14 | 1IGN|1|C+ 1IGN|1|D | DNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3') | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-ray diffraction | 2.25 | 38 | 1997-01-27 | ||||
| 15 | 1IGN|1|E+ 1IGN|1|F | DNA (5'-D(*CP*CP*GP*CP*AP*CP*AP*CP*CP*CP*AP*CP*AP*CP*AP*CP*C P*AP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G P*CP*G)-3') | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-ray diffraction | 2.25 | 37 | 1997-01-27 | ||||
| 16 | 2ATL|1|E+ 2ATL|1|D | 5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified Insertion Ternary Complex | X-ray diffraction | 2.8 | 30 | 2006-01-10 | ||||
| 17 | 2ATL|1|J+ 2ATL|1|H | 5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified Insertion Ternary Complex | X-ray diffraction | 2.8 | 32 | 2006-01-10 | ||||
| 18 | 3PT6|1|C+ 3PT6|1|I | DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-ray diffraction | 3 | 38 | 2010-12-29 | ||||
| 19 | 3PT6|1|D+ 3PT6|1|J | DNA (5'-D(*CP*CP*TP*GP*CP*GP*GP*AP*GP*GP*CP*TP*CP*AP*CP*GP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*CP*GP*TP*GP*AP*GP*CP*CP*TP*CP*CP*GP*CP*AP*GP*G)-3') | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-ray diffraction | 3 | 38 | 2010-12-29 | ||||
| 20 | 3KHG|1|E+ 3KHG|1|D | 5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.96 | 32 | 2010-02-16 | ||||
| 21 | 3KHG|1|J+ 3KHG|1|H | 5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.96 | 18 | 2010-02-16 | ||||
| 22 | 2RGR|1|D+ 2RGR|1|C | DNA | Topoisomerase IIA bound to G-segment DNA | X-ray diffraction | 3 | 34 | 2007-12-25 | ||||
| 23 | 2AU0|1|E+ 2AU0|1|D | 5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified preinsertion binary complex | X-ray diffraction | 2.7 | 26 | 2006-01-10 | ||||
| 24 | 2AU0|1|J+ 2AU0|1|H | 5'-D(*CP*TP*AP*AP*CP*G*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3' | Unmodified preinsertion binary complex | X-ray diffraction | 2.7 | 26 | 2006-01-10 | ||||
| 25 | 2HMI|1|E+ 2HMI|1|F | DNA (5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3') | HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX | X-ray diffraction | 2.8 | 37 | 1998-10-14 | ||||
| 26 | 1NGM|1|C+ 1NGM|1|D | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 27 | 1NGM|1|G+ 1NGM|1|H | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 28 | 1NGM|1|K+ 1NGM|1|L | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 29 | 1NGM|1|O+ 1NGM|1|P | 5'-D(*AP*AP*AP*AP*AP*AP*CP*AP*TP*TP*TP*TP*TP*TP*TP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*T)-3' | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-ray diffraction | 2.95 | 38 | 2003-03-25 | ||||
| 30 | 1NKP|1|F+ 1NKP|1|G | 5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' | Crystal structure of Myc-Max recognizing DNA | X-ray diffraction | 1.8 | 38 | 2003-02-04 | ||||
| 31 | 1LAT|1|C+ 1LAT|1|D | DNA (5'-D(*TP*TP*CP*CP*AP*GP*AP*AP*CP*AP*TP*GP*TP*TP*CP*TP*G P*GP*A)-3') | GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX | X-ray diffraction | 1.9 | 38 | 1996-04-03 | ||||
| 32 | 1TRO|1|I+ 1TRO|1|J | DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3') | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-ray diffraction | 1.9 | 38 | 1994-01-31 | ||||
| 33 | 1TRO|1|K+ 1TRO|1|L | DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T P*AP*C)-3') | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-ray diffraction | 1.9 | 38 | 1994-01-31 | ||||
| 34 | 1MJO|1|F+ 1MJO|1|G | CONSENSUS DNA OPERATOR DUPLEX WITH THE CENTRAL TA STEP MUTATED TO AT | METHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO AT | X-ray diffraction | 2.1 | 38 | 1999-08-02 | ||||
| 35 | 2DGC|1|B | DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') | GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA | X-ray diffraction | 2.2 | 19 | 1996-03-08 | ||||
| 36 | 1MJQ|1|E+ 1MJQ|1|F | MUTATED MET CONSENSUS OPERATOR DUPLEX | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.4 | 38 | 1999-08-02 | ||||
| 37 | 1MJ2|1|F+ 1MJ2|1|G | DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*TP*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.4 | 38 | 1999-08-02 | ||||
| 38 | 1MJQ|1|K+ 1MJQ|1|L | MUTATED MET CONSENSUS OPERATOR DUPLEX | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-ray diffraction | 2.4 | 38 | 1999-08-02 | ||||
| 39 | 1R4O|1|C+ 1R4O|1|D | 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*CP*TP*G)-3' | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-ray diffraction | 2.5 | 38 | 2003-10-21 | ||||
| 40 | 1B01|1|E+ 1B01|1|F | DNA (5'-D(*CP*CP*CP*GP*TP*GP*CP*AP*CP*TP*CP*AP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*GP*AP*TP*TP*GP*CP*AP*TP*TP*GP*AP*GP*TP*GP*CP*AP*CP*GP*G)-3') | TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX | X-ray diffraction | 2.56 | 38 | 1999-11-19 | ||||
| 41 | 1D66|1|D+ 1D66|1|E | DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3') | DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX | X-ray diffraction | 2.7 | 38 | 1992-03-06 | ||||
| 42 | 2DRP|1|B+ 2DRP|1|C | DNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3') | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-ray diffraction | 2.8 | 38 | 1994-08-31 | ||||
| 43 | 2DRP|1|E+ 2DRP|1|F | DNA (5'-D(*CP*TP*AP*AP*TP*AP*AP*GP*GP*AP*TP*AP*AP*CP*GP*TP*C P*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*GP*TP*TP*AP*TP*CP*CP*TP*TP*AP*T P*TP*A)-3') | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-ray diffraction | 2.8 | 38 | 1994-08-31 | ||||
| 44 | 1GLU|1|C+ 1GLU|1|D | DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*TP*CP*GP*AP*TP*GP*TP*TP*C P*TP*G)-3') | CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA | X-ray diffraction | 2.9 | 38 | 1994-01-31 | ||||
| 45 | 1DGC|1|B | DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') | THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY | X-ray diffraction | 3 | 19 | 1994-06-22 | ||||
| 46 | 1R4R|1|C+ 1R4R|1|D | 5'-D(*CP*TP*GP*AP*GP*AP*AP*CP*AP*TP*CP*AP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*TP*GP*AP*TP*GP*TP*TP*CP*TP*CP*A)-3' | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-ray diffraction | 3 | 38 | 2003-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2ATL|1|J+ 2ATL|1|H | Unmodified Insertion Ternary Complex | X-RAY DIFFRACTION | 2.8 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 2 | 2ASJ|1|E+ 2ASJ|1|D | oxoG-modified Preinsertion Binary Complex | X-RAY DIFFRACTION | 2.35 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 3 | 2AU0|1|E+ 2AU0|1|D | Unmodified preinsertion binary complex | X-RAY DIFFRACTION | 2.7 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 4 | 2ATL|1|E+ 2ATL|1|D | Unmodified Insertion Ternary Complex | X-RAY DIFFRACTION | 2.8 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 5 | 2ASJ|1|J+ 2ASJ|1|H | oxoG-modified Preinsertion Binary Complex | X-RAY DIFFRACTION | 2.35 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 6 | 3KHG|1|J+ 3KHG|1|H | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.96 | 18 | double helix,structure | enzyme,polymerase,transferase | |
| 7 | 3KHG|1|E+ 3KHG|1|D | Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.96 | 32 | double helix,structure | enzyme,polymerase,transferase | |
| 8 | 3GII|1|E+ 3GII|1|D | Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation | X-RAY DIFFRACTION | 2.6 | 31 | enzyme,polymerase,transferase | ||
| 9 | 2ASL|1|E+ 2ASL|1|D | oxoG-modified Postinsertion Binary Complex | X-RAY DIFFRACTION | 2.65 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 10 | 2ASL|1|J+ 2ASL|1|H | oxoG-modified Postinsertion Binary Complex | X-RAY DIFFRACTION | 2.65 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 11 | 2ASD|1|E+ 2ASD|1|D | oxoG-modified Insertion Ternary Complex | X-RAY DIFFRACTION | 1.95 | 30 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 12 | 2ASD|1|J+ 2ASD|1|H | oxoG-modified Insertion Ternary Complex | X-RAY DIFFRACTION | 1.95 | 32 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 13 | 2AU0|1|J+ 2AU0|1|H | Unmodified preinsertion binary complex | X-RAY DIFFRACTION | 2.7 | 26 | double helix,structure | enzyme,polymerase,transferase | |
| 14 | 1NGM|1|O+ 1NGM|1|P | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 15 | 1NGM|1|K+ 1NGM|1|L | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 16 | 1NGM|1|G+ 1NGM|1|H | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 17 | 1NGM|1|C+ 1NGM|1|D | Crystal structure of a yeast Brf1-TBP-DNA ternary complex | X-RAY DIFFRACTION | 2.95 | 38 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 18 | 2R8G|1|T+ 2R8G|1|P | Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase | X-RAY DIFFRACTION | 2.7 | 31 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 19 | 2HMI|1|E+ 2HMI|1|F | HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX | X-RAY DIFFRACTION | 2.8 | 37 | double helix,structure | antibody,enzyme,immune system,polymerase,regulatory,transferase | |
| 20 | 1B01|1|E+ 1B01|1|F | TRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX | X-RAY DIFFRACTION | 2.56 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 21 | 1GLU|1|C+ 1GLU|1|D | CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA | X-RAY DIFFRACTION | 2.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 22 | 2DRP|1|B+ 2DRP|1|C | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-RAY DIFFRACTION | 2.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 23 | 2DRP|1|E+ 2DRP|1|F | THE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN EXTENSION TO THE RULES FOR ZINC-FINGER/DNA RECOGNITION | X-RAY DIFFRACTION | 2.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 24 | 2C9L|1|A+ 2C9L|1|B | Structure of the Epstein-Barr virus ZEBRA protein | X-RAY DIFFRACTION | 2.25 | 37 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 25 | 2DGC|1|B | GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA | X-RAY DIFFRACTION | 2.2 | 19 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 26 | 1DGC|1|B | THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY | X-RAY DIFFRACTION | 3 | 19 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 27 | 1CRX|1|D+ 1CRX|1|E | CRE RECOMBINASE/DNA COMPLEX REACTION INTERMEDIATE I | X-RAY DIFFRACTION | 2.4 | 34 | enzyme,recombinase | ||
| 28 | 1IGN|1|C+ 1IGN|1|D | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-RAY DIFFRACTION | 2.25 | 38 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | ||
| 29 | 1IGN|1|E+ 1IGN|1|F | DNA-BINDING DOMAIN OF RAP1 IN COMPLEX WITH TELOMERIC DNA SITE | X-RAY DIFFRACTION | 2.25 | 37 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | ||
| 30 | 1R4O|1|C+ 1R4O|1|D | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-RAY DIFFRACTION | 2.5 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 31 | 1R4R|1|C+ 1R4R|1|D | Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA | X-RAY DIFFRACTION | 3 | 38 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 32 | 1NKP|1|F+ 1NKP|1|G | Crystal structure of Myc-Max recognizing DNA | X-RAY DIFFRACTION | 1.8 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription | |
| 33 | 1D66|1|D+ 1D66|1|E | DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX | X-RAY DIFFRACTION | 2.7 | 38 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 34 | 1LAT|1|C+ 1LAT|1|D | GLUCOCORTICOID RECEPTOR MUTANT/DNA COMPLEX | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 35 | 3KMD|1|E+ 3KMD|1|F | Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer | X-RAY DIFFRACTION | 2.15 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription | |
| 36 | 3PT6|1|C+ 3PT6|1|I | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-RAY DIFFRACTION | 3 | 38 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 37 | 3PT6|1|D+ 3PT6|1|J | Crystal structure of mouse DNMT1(650-1602) in complex with DNA | X-RAY DIFFRACTION | 3 | 38 | B-form double helix,double helix,structure | enzyme,methylase,transferase | |
| 38 | 2H7H|1|X+ 2H7H|1|Y | Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNA | X-RAY DIFFRACTION | 2.3 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 39 | 1TRO|1|I+ 1TRO|1|J | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 40 | 1TRO|1|K+ 1TRO|1|L | CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION | X-RAY DIFFRACTION | 1.9 | 38 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,trp repressor | |
| 41 | 1MJ2|1|F+ 1MJ2|1|G | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO A CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.4 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 42 | 1MJO|1|F+ 1MJO|1|G | METHIONINE HOLOREPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR WITH THE CENTRAL TA STEP MUTATED TO AT | X-RAY DIFFRACTION | 2.1 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 43 | 1MJQ|1|E+ 1MJQ|1|F | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.4 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 44 | 1MJQ|1|K+ 1MJQ|1|L | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO AN ALTERED MET CONSENSUS OPERATOR SEQUENCE | X-RAY DIFFRACTION | 2.4 | 38 | DNA-binding transcription factor (TF),MetR homology,other α-helix,regulatory,transcription | ||
| 45 | 3K9F|1|F+ 3K9F|1|H+ 3K9F|1|E+ 3K9F|1|G | Detailed structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases | X-RAY DIFFRACTION | 2.9 | 36 | double helix,structure | enzyme,isomerase | |
| 46 | 2RGR|1|D+ 2RGR|1|C | Topoisomerase IIA bound to G-segment DNA | X-RAY DIFFRACTION | 3 | 34 | B-form double helix,double helix,structure | enzyme,isomerase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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