Equivalence class DNA_3.0_73490.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|G (rep) | DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3') | Cre recombinase-DNA transition state | X-ray diffraction | 2.29 | 70 | 2010-05-26 | ||||
| 2 | 3MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|L | DNA (5'-D(*CP*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*G)-3') | Cre recombinase-DNA transition state | X-ray diffraction | 2.29 | 70 | 2010-05-26 | ||||
| 3 | 3JXC|1|A+ 3JXC|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-ray diffraction | 1.9 | 40 | 2010-01-19 | ||||
| 4 | 1MUS|1|B+ 1MUS|1|C | DNA non-transferred strand, DNA transferred strand | crystal structure of Tn5 transposase complexed with resolved outside end DNA | X-ray diffraction | 1.9 | 40 | 2002-09-27 | ||||
| 5 | 2R1J|1|A+ 2R1J|1|B | 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3' | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-ray diffraction | 1.53 | 40 | 2008-04-29 | ||||
| 6 | 3JXB|1|A+ 3JXB|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-ray diffraction | 1.67 | 40 | 2010-01-19 | ||||
| 7 | 2XCS|1|E+ 2XCS|1|F | 5'-5UA*D(GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP *CP*TP*AP*CP*GP*GP*CP*T)-3' | synthetic construct | The 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNA | X-ray diffraction | 2.1 | 39 | 2010-08-04 | |||
| 8 | 2HAN|1|C+ 2HAN|1|D | 5'-D(*CP*AP*AP*GP*GP*GP*TP*TP*CP*AP*AP*TP*GP*CP*AP*CP*TP*TP*GP*T)-3', 5'-D(*GP*AP*CP*AP*AP*GP*TP*GP*CP*AP*TP*TP*GP*AP*AP*CP*CP*CP*TP*T)-3' | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-ray diffraction | 1.95 | 40 | 2007-05-22 | ||||
| 9 | 3JXD|1|A+ 3JXD|1|B | 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3' | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ | X-ray diffraction | 2.1 | 40 | 2010-01-19 | ||||
| 10 | 1MUH|1|B+ 1MUH|1|C | DNA NON-TRANSFERRED STRAND, DNA TRANSFERRED STRAND | CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNA | X-ray diffraction | 2.3 | 40 | 2002-09-27 | ||||
| 11 | 1ZG5|1|G+ 1ZG5|1|H | 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 40 | 2005-11-22 | ||||
| 12 | 1ZG5|1|C+ 1ZG5|1|D | 5'-D(*CP*GP*TP*AP*CP*CP*CP*CP*TP*AP*TP*AP*GP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 40 | 2005-11-22 | ||||
| 13 | 1GA5|1|G+ 1GA5|1|H | 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3' | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-ray diffraction | 2.4 | 40 | 2001-11-16 | ||||
| 14 | 3COQ|1|D+ 3COQ|1|E | DNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3'), DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3') | synthetic construct | Structural Basis for Dimerization in DNA Recognition by Gal4 | X-ray diffraction | 2.4 | 40 | 2008-07-01 | |||
| 15 | 1GA5|1|C+ 1GA5|1|D | 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*(5IT)P*G)-3' | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-ray diffraction | 2.4 | 40 | 2001-11-16 | ||||
| 16 | 1ZG1|1|C+ 1ZG1|1|D | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 40 | 2005-11-22 | ||||
| 17 | 1ZG1|1|G+ 1ZG1|1|H | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*GP*GP*AP*GP*TP*AP*CP*G)-3', 5'-D(*CP*GP*TP*AP*CP*TP*CP*CP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-ray diffraction | 2.3 | 40 | 2005-11-22 | ||||
| 18 | 3C2I|1|B+ 3C2I|1|C | DNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3'), DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3') | The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF | X-ray diffraction | 2.5 | 40 | 2008-05-13 | ||||
| 19 | 1PUF|1|D+ 1PUF|1|E | 5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*AP*CP*GP*CP*T)-3', 5'-D(*TP*AP*GP*CP*GP*TP*CP*GP*TP*AP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3' | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-ray diffraction | 1.9 | 40 | 2003-09-02 | ||||
| 20 | 3K5M|1|T+ 3K5M|1|P | DNA (5'-D(*AP*GP*TP*CP*CP*TP*GP*(3DR)P*AP*CP*GP*CP*TP*AP*GP*GP*CP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*CP*CP*TP*AP*GP*CP*GP*TP*AP*G)-3') | Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex | X-ray diffraction | 2.04 | 33 | 2010-02-02 | ||||
| 21 | 1A6Y|1|C+ 1A6Y|1|D | DNA (5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*(5IT)P*AP*GP*GP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3') | REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX | X-ray diffraction | 2.3 | 40 | 1998-10-21 | ||||
| 22 | 1LE8|1|C+ 1LE8|1|D | 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3', 5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3' | Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex | X-ray diffraction | 2.3 | 40 | 2002-05-03 | ||||
| 23 | 1HLZ|1|C+ 1HLZ|1|D | 5'-D(*CP*AP*AP*CP*TP*AP*GP*GP*TP*CP*AP*CP*TP*AP*GP*GP*TP*CP*AP*G)-3', 5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*GP*TP*GP*AP*CP*CP*TP*AP*GP*TP*TP*G)-3' | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-ray diffraction | 2.8 | 40 | 2001-11-16 | ||||
| 24 | 1A02|1|A+ 1A02|1|B | DNA (5'-D(*DAP*DAP*DCP*DTP*DAP*DTP*DGP*DAP*DAP*DAP*DCP*DAP*DAP*DAP*DTP*DTP*DTP*DTP*DCP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DAP*DAP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DTP*DCP*DAP*DTP*DAP*DG)-3') | STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA | X-ray diffraction | 2.7 | 40 | 1998-05-27 | ||||
| 25 | 2WTY|1|C+ 2WTY|1|D | DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3') | Crystal structure of the homodimeric MafB in complex with the T-MARE binding site | X-ray diffraction | 2.9 | 39 | 2010-12-08 | ||||
| 26 | 2VY1|1|W | 5'-D(*TP*TP*AP*CP*GP*GP*AP*CP*CP*AP *CP*TP*GP*GP*TP*CP*CP*TP*TP*CP)-3' | Arabidopsis thaliana | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoter | X-ray diffraction | 2.104 | 20 | 2008-09-23 | |||
| 27 | 2R5Y|1|C+ 2R5Y|1|D | DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3') | synthetic construct | Structure of Scr/Exd complex bound to a consensus Hox-Exd site | X-ray diffraction | 2.6 | 40 | 2008-02-05 | |||
| 28 | 3ECP|1|B+ 3ECP|1|C | DNA non-transferred strand, DNA transferred strand | Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA | X-ray diffraction | 2.5 | 40 | 2008-10-21 | ||||
| 29 | 2VY2|1|W | 5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3' | Arabidopsis thaliana | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoter | X-ray diffraction | 2.3 | 20 | 2008-09-23 | |||
| 30 | 2R5Z|1|C+ 2R5Z|1|D | DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DAP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DTP*DTP*DAP*DGP*DAP*DG)-3') | synthetic construct | Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene | X-ray diffraction | 2.6 | 40 | 2008-02-05 | |||
| 31 | 2C62|1|C | 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3' | Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA | X-ray diffraction | 1.74 | 16 | 2006-01-11 | ||||
| 32 | 3DFX|1|X+ 3DFX|1|Y | DNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3') | Opposite GATA DNA binding | X-ray diffraction | 2.7 | 40 | 2008-07-29 | ||||
| 33 | 2Q2K|1|F | DNA (5'-D(*AP*GP*TP*AP*TP*AP*(5IU)P*AP*CP*(5IU)P*AP*GP*TP*AP*TP*AP*TP*AP*CP*T)-3') | Structure of nucleic-acid binding protein | X-ray diffraction | 3 | 20 | 2008-02-05 | ||||
| 34 | 3KHL|1|J+ 3KHL|1|H | 5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3' | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.1 | 31 | 2010-02-16 | ||||
| 35 | 3KHL|1|E+ 3KHL|1|D | 5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*AP*(DDG))-3' | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-ray diffraction | 2.1 | 30 | 2010-02-16 | ||||
| 36 | 2ZHG|1|B | DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3') | Crystal structure of SoxR in complex with DNA | X-ray diffraction | 2.8 | 20 | 2008-03-25 | ||||
| 37 | 3DSC|1|B | DNA (5'-D(P*DCP*DAP*DCP*DAP*DAP*DGP*DCP*DTP*DTP*DTP*DTP*DGP*DCP*DTP*DTP*DGP*DTP*DGP*DAP*DC)-3') | Crystal structure of P. furiosus Mre11 DNA synaptic complex | X-ray diffraction | 2.7 | 17 | 2008-10-14 | ||||
| 38 | 1JE8|1|G+ 1JE8|1|H | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-ray diffraction | 2.12 | 40 | 2002-09-27 | ||||
| 39 | 1JE8|1|C+ 1JE8|1|D | 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3' | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-ray diffraction | 2.12 | 40 | 2002-09-27 | ||||
| 40 | 3CRO|1|A+ 3CRO|1|B | DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3') | THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-ray diffraction | 2.5 | 40 | 1991-10-15 | ||||
| 41 | 1B72|1|D+ 1B72|1|E | DNA (5'-D(*AP*CP*TP*CP*TP*AP*TP*GP*AP*TP*TP*GP*AP*TP*CP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*CP*GP*AP*TP*CP*AP*AP*TP*CP*AP*TP*AP*GP*AP*G)-3') | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX | X-ray diffraction | 2.35 | 40 | 1999-02-19 | ||||
| 42 | 2RAM|1|C+ 2RAM|1|D | DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3') | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-ray diffraction | 2.4 | 40 | 1998-05-27 | ||||
| 43 | 6CRO|1|R+ 6CRO|1|U | DNA (5'-D(*AP*CP*TP*AP*TP*CP*AP*CP*CP*GP*CP*GP*GP*GP*TP*GP*AP*TP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*AP*TP*CP*AP*CP*CP*CP*GP*CP*GP*GP*TP*GP*AP*TP*AP*G)-3') | CRYSTAL STRUCTURE OF LAMBDA-CRO BOUND TO A CONSENSUS OPERATOR AT 3.0 ANGSTROM RESOLUTION | X-ray diffraction | 3 | 40 | 1998-09-18 | ||||
| 44 | 1RAM|1|C+ 1RAM|1|D | DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*TP*TP*CP*CP*AP*GP*CP*CP*G)-3') | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-ray diffraction | 2.7 | 40 | 1998-05-27 | ||||
| 45 | 1L3L|1|F+ 1L3L|1|H | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 40 | 2002-07-03 | ||||
| 46 | 1LMB|1|1+ 1LMB|1|2 | DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-ray diffraction | 1.8 | 40 | 1991-11-05 | ||||
| 47 | 1L3L|1|E+ 1L3L|1|G | 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3' | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-ray diffraction | 1.66 | 40 | 2002-07-03 | ||||
| 48 | 1LLI|1|D+ 1LLI|1|E | DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') | THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING | X-ray diffraction | 2.1 | 40 | 1994-08-31 | ||||
| 49 | 1JNM|1|C+ 1JNM|1|D | 5'-D(*CP*GP*TP*CP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*GP*AP*CP*G)-3' | Crystal Structure of the Jun/CRE Complex | X-ray diffraction | 2.2 | 40 | 2003-06-03 | ||||
| 50 | 1HWT|1|A+ 1HWT|1|B | DNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3') | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-ray diffraction | 2.5 | 40 | 1999-11-10 | ||||
| 51 | 2HAP|1|A+ 2HAP|1|B | DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3') | STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATION | X-ray diffraction | 2.5 | 40 | 1999-11-10 | ||||
| 52 | 1HWT|1|E+ 1HWT|1|F | DNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3') | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-ray diffraction | 2.5 | 40 | 1999-11-10 | ||||
| 53 | 1MSW|1|T+ 1MSW|1|R | RNA message, Template DNA | Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase | X-ray diffraction | 2.1 | 30 | 2002-11-15 | ||||
| 54 | 1PER|1|A+ 1PER|1|B | DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*GP*TP*TP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*AP*AP*CP*TP*GP*T P*AP*CP*T)-3') | THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES | X-ray diffraction | 2.5 | 40 | 1994-01-31 | ||||
| 55 | 1YSA|1|A+ 1YSA|1|B | DNA (5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3') | THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX | X-ray diffraction | 2.9 | 40 | 1993-10-31 | ||||
| 56 | 1UBD|1|A+ 1UBD|1|B | DNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3') | CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT | X-ray diffraction | 2.5 | 40 | 1996-12-23 | ||||
| 57 | 1RPE|1|A+ 1RPE|1|B | DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*AP*GP*AP*TP*AP*CP*AP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*TP*GP*TP*AP*TP*CP*TP*TP*GP*T P*TP*TP*G)-3') | THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-ray diffraction | 2.5 | 40 | 1994-01-31 | ||||
| 58 | 1FOK|1|B+ 1FOK|1|C | DNA (5'-D(*AP*TP*GP*AP*CP*TP*AP*GP*CP*GP*TP*TP*AP*TP*CP*AP*T P*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*TP*GP*AP*TP*AP*AP*CP*GP*CP*TP*AP*G P*TP*CP*A)-3') | Planomicrobium okeanokoites | STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA | X-ray diffraction | 2.8 | 40 | 1997-12-03 | |||
| 59 | 2OR1|1|A+ 2OR1|1|B | DNA (5'-D(*AP*AP*GP*TP*AP*CP*AP*AP*AP*CP*TP*TP*TP*CP*TP*TP*G P*TP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*GP*AP*AP*AP*GP*TP*TP*TP*GP*T P*AP*CP*T)-3') | RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION | X-ray diffraction | 2.5 | 40 | 1989-09-05 | ||||
| 60 | 1MM8|1|B+ 1MM8|1|C | ME DNA non-transferred strand, ME DNA transferred strand | Crystal structure of Tn5 Transposase complexed with ME DNA | X-ray diffraction | 2.8 | 40 | 2002-12-13 | ||||
| 61 | 1QP9|1|E+ 1QP9|1|F | DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3') | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-ray diffraction | 2.8 | 40 | 2000-10-09 | ||||
| 62 | 1QP9|1|G+ 1QP9|1|H | DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*T)-3'), DNA (5'-D(*AP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*T)-3') | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-ray diffraction | 2.8 | 37 | 2000-10-09 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1MSW|1|T+ 1MSW|1|R | Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase | X-RAY DIFFRACTION | 2.1 | 30 | enzyme,polymerase,transferase | ||
| 2 | 3K5M|1|T+ 3K5M|1|P | Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex | X-RAY DIFFRACTION | 2.04 | 33 | enzyme,polymerase,transferase | ||
| 3 | 3ECP|1|B+ 3ECP|1|C | Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA | X-RAY DIFFRACTION | 2.5 | 40 | enzyme,hydrolase,nuclease,recombinase | ||
| 4 | 1MUS|1|B+ 1MUS|1|C | crystal structure of Tn5 transposase complexed with resolved outside end DNA | X-RAY DIFFRACTION | 1.9 | 40 | enzyme,hydrolase,nuclease,recombinase | ||
| 5 | 1MUH|1|B+ 1MUH|1|C | CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNA | X-RAY DIFFRACTION | 2.3 | 40 | enzyme,hydrolase,nuclease,recombinase | ||
| 6 | 1MM8|1|B+ 1MM8|1|C | Crystal structure of Tn5 Transposase complexed with ME DNA | X-RAY DIFFRACTION | 2.8 | 40 | enzyme,hydrolase,nuclease,recombinase | ||
| 7 | 3KHL|1|J+ 3KHL|1|H | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.1 | 31 | enzyme,polymerase,transferase | ||
| 8 | 3KHL|1|E+ 3KHL|1|D | Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion | X-RAY DIFFRACTION | 2.1 | 30 | enzyme,polymerase,transferase | ||
| 9 | 2XCS|1|E+ 2XCS|1|F | The 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNA | X-RAY DIFFRACTION | 2.1 | 39 | double helix,structure | enzyme,isomerase | |
| 10 | 2Q2K|1|F | Structure of nucleic-acid binding protein | X-RAY DIFFRACTION | 3 | 20 | double helix,structure | centromere,chromatin,structural | |
| 11 | 1ZG1|1|G+ 1ZG1|1|H | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 12 | 1ZG1|1|C+ 1ZG1|1|D | NarL complexed to nirB promoter non-palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 13 | 1ZG5|1|C+ 1ZG5|1|D | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 14 | 1ZG5|1|G+ 1ZG5|1|H | NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site | X-RAY DIFFRACTION | 2.3 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 15 | 1JE8|1|G+ 1JE8|1|H | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-RAY DIFFRACTION | 2.12 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 16 | 1JE8|1|C+ 1JE8|1|D | Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site | X-RAY DIFFRACTION | 2.12 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 17 | 1LE8|1|C+ 1LE8|1|D | Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex | X-RAY DIFFRACTION | 2.3 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 18 | 1L3L|1|E+ 1L3L|1|G | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 19 | 1L3L|1|F+ 1L3L|1|H | Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA | X-RAY DIFFRACTION | 1.66 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 20 | 3JXB|1|A+ 3JXB|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C | X-RAY DIFFRACTION | 1.67 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 21 | 3JXC|1|A+ 3JXC|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ | X-RAY DIFFRACTION | 1.9 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 22 | 3JXD|1|A+ 3JXD|1|B | Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ | X-RAY DIFFRACTION | 2.1 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 23 | 2R1J|1|A+ 2R1J|1|B | Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T | X-RAY DIFFRACTION | 1.53 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 24 | 1FOK|1|B+ 1FOK|1|C | STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA | X-RAY DIFFRACTION | 2.8 | 40 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 25 | 1PER|1|A+ 1PER|1|B | THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 26 | 2OR1|1|A+ 2OR1|1|B | RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE 434. A VIEW AT HIGH RESOLUTION | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 27 | 1RPE|1|A+ 1RPE|1|B | THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 28 | 3CRO|1|A+ 3CRO|1|B | THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 29 | 1LLI|1|D+ 1LLI|1|E | THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT IMPROVED HYDROPHOBIC CORE PACKING | X-RAY DIFFRACTION | 2.1 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 30 | 1LMB|1|1+ 1LMB|1|2 | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX | X-RAY DIFFRACTION | 1.8 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | |
| 31 | 2HAN|1|C+ 2HAN|1|D | Structural basis of heterodimeric ecdysteroid receptor interaction with natural response element hsp27 gene promoter | X-RAY DIFFRACTION | 1.95 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 32 | 2WTY|1|C+ 2WTY|1|D | Crystal structure of the homodimeric MafB in complex with the T-MARE binding site | X-RAY DIFFRACTION | 2.9 | 39 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 33 | 3COQ|1|D+ 3COQ|1|E | Structural Basis for Dimerization in DNA Recognition by Gal4 | X-RAY DIFFRACTION | 2.4 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 34 | 3DFX|1|X+ 3DFX|1|Y | Opposite GATA DNA binding | X-RAY DIFFRACTION | 2.7 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 35 | 1JNM|1|C+ 1JNM|1|D | Crystal Structure of the Jun/CRE Complex | X-RAY DIFFRACTION | 2.2 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | |
| 36 | 1HLZ|1|C+ 1HLZ|1|D | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-RAY DIFFRACTION | 2.8 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 37 | 1GA5|1|G+ 1GA5|1|H | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-RAY DIFFRACTION | 2.4 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 38 | 1GA5|1|C+ 1GA5|1|D | CRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN BOUND TO ITS COGNATE RESPONSE ELEMENT | X-RAY DIFFRACTION | 2.4 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 39 | 1A6Y|1|C+ 1A6Y|1|D | REVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX | X-RAY DIFFRACTION | 2.3 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription | |
| 40 | 1UBD|1|A+ 1UBD|1|B | CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription | |
| 41 | 1B72|1|D+ 1B72|1|E | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX | X-RAY DIFFRACTION | 2.35 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 42 | 3C2I|1|B+ 3C2I|1|C | The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | chromatin,structural | |
| 43 | 1YSA|1|A+ 1YSA|1|B | THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX | X-RAY DIFFRACTION | 2.9 | 40 | DNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription | ||
| 44 | 2VY1|1|W | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AP1 promoter | X-RAY DIFFRACTION | 2.104 | 20 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 45 | 2VY2|1|W | Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoter | X-RAY DIFFRACTION | 2.3 | 20 | B-form double helix,double helix,feature,mispair,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 46 | 2R5Y|1|C+ 2R5Y|1|D | Structure of Scr/Exd complex bound to a consensus Hox-Exd site | X-RAY DIFFRACTION | 2.6 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 47 | 2R5Z|1|C+ 2R5Z|1|D | Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene | X-RAY DIFFRACTION | 2.6 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 48 | 1A02|1|A+ 1A02|1|B | STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA | X-RAY DIFFRACTION | 2.7 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),basic transcription factor,immunoglobulin (Ig) fold,leucine zipper (bZIP),regulatory,rel homology,transcription | |
| 49 | 1PUF|1|D+ 1PUF|1|E | Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA | X-RAY DIFFRACTION | 1.9 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription | |
| 50 | 1RAM|1|C+ 1RAM|1|D | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-RAY DIFFRACTION | 2.7 | 40 | double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 51 | 2RAM|1|C+ 2RAM|1|D | A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER | X-RAY DIFFRACTION | 2.4 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),immunoglobulin (Ig) fold,regulatory,rel homology,transcription | |
| 52 | 1HWT|1|A+ 1HWT|1|B | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 53 | 1HWT|1|E+ 1HWT|1|F | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING BY A HOMODIMERIC PROTEIN | X-RAY DIFFRACTION | 2.5 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 54 | 1QP9|1|G+ 1QP9|1|H | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-RAY DIFFRACTION | 2.8 | 37 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 55 | 1QP9|1|E+ 1QP9|1|F | STRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7 | X-RAY DIFFRACTION | 2.8 | 40 | B-form double helix,double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 56 | 2HAP|1|A+ 2HAP|1|B | STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN HAVE DIRECT ALLOSTERIC EFFECTS ON TRANSCRIPTIONAL ACTIVATION | X-RAY DIFFRACTION | 2.5 | 40 | double helix,structure | DNA-binding transcription factor (TF),Zinc-coordinating,regulatory,transcription | |
| 57 | 3MGV|1|F+ 3MGV|1|H+ 3MGV|1|E+ 3MGV|1|G | Cre recombinase-DNA transition state | X-RAY DIFFRACTION | 2.29 | 70 | enzyme,recombinase | ||
| 58 | 3MGV|1|K+ 3MGV|1|M+ 3MGV|1|I+ 3MGV|1|L | Cre recombinase-DNA transition state | X-RAY DIFFRACTION | 2.29 | 70 | enzyme,recombinase | ||
| 59 | 2ZHG|1|B | Crystal structure of SoxR in complex with DNA | X-RAY DIFFRACTION | 2.8 | 20 | double helix,structure | DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead | |
| 60 | 2C62|1|C | Crystal Structure of the Human Transcription Cofactor PC4 in Complex with Single-Stranded DNA | X-RAY DIFFRACTION | 1.74 | 16 | regulatory,transcription | ||
| 61 | 6CRO|1|R+ 6CRO|1|U | CRYSTAL STRUCTURE OF LAMBDA-CRO BOUND TO A CONSENSUS OPERATOR AT 3.0 ANGSTROM RESOLUTION | X-RAY DIFFRACTION | 3 | 40 | DNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription | ||
| 62 | 3DSC|1|B | Crystal structure of P. furiosus Mre11 DNA synaptic complex | X-RAY DIFFRACTION | 2.7 | 17 | DNA replication/repair,enzyme,hydrolase,nuclease,regulatory |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: